YRC Public Data Repository - Protein Structure Prediction

Protein:	tag-296
Organism:	Caenorhabditis elegans
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-296.

Description	E-value	Query Range	Subject Range
CE33286 - WBGene00018632 locus:tag-296 status:Partially_confirmed TR:Q86LT5 protein_id:AAO26011.1	332.0	[0..1]	[281..1]
gi\|109066999 - gi\|109066999\|ref\|XP_001086395.1\| PREDICTED: similar to pleckstrin homology domain containing, family...	241.0	[0..57]	[279..291]
gi\|114612637 - gi\|114612637\|ref\|XP_527709.2\| PREDICTED: pleckstrin homology domain containing, family A (phosphoino...	241.0	[0..57]	[279..291]
PKHA8_BOVIN - Pleckstrin homology domain-containing family A member 8 OS=Bos taurus GN=PLEKHA8 PE=3 SV=2	235.0	[0..53]	[279..288]
gi\|73976553 - gi\|73976553\|ref\|XP_539498.2\| PREDICTED: similar to pleckstrin homology domain containing, family A (...	233.0	[0..67]	[279..554]
PKHA8_RAT - Pleckstrin homology domain-containing family A member 8 OS=Rattus norvegicus GN=Plekha8 PE=1 SV=1	231.0	[0..57]	[279..292]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLNHALTMN QQFKIKTTAF IIHLMKVYRL LSLFSLYFCD FFFVKIDKIP KFQLKMTEDT  60
   61 ASPFCIKLVA TQMKKLSTD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [80-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIIVEKSDVE NCPEVTPDDV ELLTFVEVYE ELCKFIGMLG KIFEFVEKDV REKIDLLKEL  60
   61 HTANPEGYKT VVALVHSEKP MEKNGKESGA VAILHLNRAL EFIVEFMYAA VAATNDDSIP 120
  121 KICKECYDGT LAKHHPWIIR TAVKVAVYTL PTREKMLDYL KAGSVTDESL IRVLIDDVVS 180
  181 HGKIVHSRIN TIYTVHELHK IA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.045757
Match:	1tfjA
Description:	Crystal structure of Bovine Glycolipid transfer protein in complex with a fatty acid
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits