YRC Public Data Repository - Protein Structure Prediction

Protein:	Tm2-PC
Organism:	Drosophila melanogaster
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Tm2-PC.

Description	E-value	Query Range	Subject Range
gi\|109096771 - gi\|109096771\|ref\|XP_001093676.1\| PREDICTED: keratin, hair, basic, 4 [Macaca mulatta]	208.0	[0..2]	[284..163]
KRT84 - keratin 84	206.0	[0..2]	[284..163]
gi\|114644580 - gi\|114644580\|ref\|XP_522389.2\| PREDICTED: keratin, hair, basic, 4 [Pan troglodytes]	202.0	[0..2]	[284..163]
gi\|57106717 - gi\|57106717\|ref\|XP_543652.1\| PREDICTED: similar to Keratin, type II cuticular Hb4 (Hair keratin, typ...	199.0	[0..2]	[284..150]
KRT84_MOUSE, K2H... - Keratin, type II cuticular Hb4 OS=Mus musculus GN=Krt84 PE=2 SV=1, (Q99M73) Keratin, type II cuticul...	198.0	[0..3]	[284..172]
gi\|57012352, gi\|... - gi\|57012352\|ref\|NP_001008828.1\| keratin 75 [Rattus norvegicus], gi\|46485112\|tpg\|DAA02225.1\| TPA_exp:...	190.0	[0..2]	[284..138]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAIKKKMQA MKLEKDNAID KADTCENQAK DANSRADKLN EEVRDLEKKF VQVEIDLVTA  60
   61 KEQLEKANTE LEEKEKLLTA TESEVATQNR KVQQIEEDLE KSEERSTTAQ QKLLEATQSA 120
  121 DENNRMCKVL ENRSQQDEER MDQLTNQLKE ARMLAEDADT KSDEVSRKLA FVEDELEVAE 180
  181 DRVRSGESKI MELEEELKVV GNSLKSLEVS EEKANQRVEE FKREMKTLSI KLKEAEQRAE 240
  241 HAEKQVKRLQ KEVDRLEDRL FNEKEKYKAI CDDLDQTFAE LTGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits