YRC Public Data Repository - Protein Structure Prediction

Protein:	RS9_CLOTE
Organism:	Clostridium tetani
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS9_CLOTE.

Description	E-value	Query Range	Subject Range
RS9_CALS4 - 30S ribosomal protein S9 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / J... RS9_THETN - 30S ribosomal protein S9 OS=Thermoanaerobacter tengcongensis GN=rpsI PE=3 SV=1	190.0	[0..1]	[130..1]
RS9_BACHD - 30S ribosomal protein S9 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9... RS9_BACHD - 30S ribosomal protein S9 OS=Bacillus halodurans GN=rpsI PE=3 SV=1	189.0	[0..1]	[130..1]
RS9_BACSK - 30S ribosomal protein S9 OS=Bacillus clausii (strain KSM-K16) GN=rpsI PE=3 SV=1	188.0	[0..1]	[130..1]
RS9_LISMC - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsI PE=3 SV=1 gi\|254825043 - gi\|254825043\|ref\|ZP_05230044.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J1-194] gi\|254854199 - gi\|254854199\|ref\|ZP_05243547.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL R2-503] gi\|254877846 - gi\|254877846\|ref\|ZP_05250556.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J2-071] gi\|254992717 - gi\|254992717\|ref\|ZP_05274907.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J2-064] gi\|255022865 - gi\|255022865\|ref\|ZP_05294851.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J1-208] gi\|255520579 - gi\|255520579\|ref\|ZP_05387816.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J1-175] RS9_LISIN - 30S ribosomal protein S9 OS=Listeria innocua GN=rpsI PE=3 SV=1 RS9_LISMF - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsI PE=3 SV=1 RS9_LISIN - 30S ribosomal protein S9 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rpsI PE=3 SV=1 RS9_LISMC - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rpsI PE=3 SV=1 gi\|254871298, gi... - gi\|254871298\|ref\|ZP_05244008.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL N1-017], gi\|153... gi\|254931134, gi... - gi\|254931134\|ref\|ZP_05264493.1\| 30S ribosomal protein S9 [Listeria monocytogenes HPB2262], gi\|153204... gi\|47018096, gi\|... - gi\|47093536\|ref\|ZP_00231297.1\| ribosomal protein S9 [Listeria monocytogenes str. 4b H7858], gi\|47018... RS9_LISMH - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsI PE=3 SV=1	188.0	[0..1]	[130..1]
RS9_CARHZ - 30S ribosomal protein S9 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-29...	188.0	[0..1]	[130..1]
RS9_LACSS - 30S ribosomal protein S9 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsI PE=3 SV=1	187.0	[0..1]	[130..1]
gi\|89084932, gi\|... - gi\|89100311\|ref\|ZP_01173176.1\| 30S ribosomal protein S9 [Bacillus sp. NRRL B-14911], gi\|89084932\|gb\|...	187.0	[0..1]	[130..1]
gi\|153197624, gi... - gi\|254830973\|ref\|ZP_05235628.1\| 30S ribosomal protein S9 [Listeria monocytogenes 10403S], gi\|1531976... gi\|254912841, gi... - gi\|254912841\|ref\|ZP_05262853.1\| 30S ribosomal protein S9 [Listeria monocytogenes J2818], gi\|15319235... gi\|133728614, gi... - gi\|254829045\|ref\|ZP_05233732.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL N3-165], gi\|153... gi\|153180760, gi... - gi\|254937221\|ref\|ZP_05268918.1\| 30S ribosomal protein S9 [Listeria monocytogenes F6900], gi\|15318076... gi\|255025627 - gi\|255025627\|ref\|ZP_05297613.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J2-003] RS9_LISMO - 30S ribosomal protein S9 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=rps... RS9_LISMO - 30S ribosomal protein S9 OS=Listeria monocytogenes GN=rpsI PE=3 SV=1 gi\|47097150, gi\|... - gi\|47097150\|ref\|ZP_00234717.1\| ribosomal protein S9 [Listeria monocytogenes str. 1/2a F6854], gi\|470... gi\|224499268 - gi\|224499268\|ref\|ZP_03667617.1\| 30S ribosomal protein S9 [Listeria monocytogenes Finland 1988] gi\|254899953, gi... - gi\|254899953\|ref\|ZP_05259877.1\| 30S ribosomal protein S9 [Listeria monocytogenes J0161], gi\|15318564... gi\|224503611 - gi\|224503611\|ref\|ZP_03671918.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL R2-561]	187.0	[0..1]	[130..1]
RS9_OCEIH - 30S ribosomal protein S9 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE... RS9_OCEIH - 30S ribosomal protein S9 OS=Oceanobacillus iheyensis GN=rpsI PE=3 SV=1	187.0	[0..1]	[130..1]
RS9_CLOTH - 30S ribosomal protein S9 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / N... gi\|196196381, gi... - gi\|196254199\|ref\|ZP_03152767.1\| ribosomal protein S9 [Clostridium thermocellum DSM 4150], gi\|1961963...	186.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVQYYGTG RRKKSIARVR LVPGEGKVLI NKRDEEEYFG LETLRVIVNQ PLVLTGTKDK  60
   61 FDVLVNVYGG GLTGQAGAIR HGISRALLKA DESLRPELKK AGFLTRDPRM KERKKYGLKK 120
  121 ARRAPQFSKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	1vs5I
Description:	No description for 1vs5I was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits