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View Structure Prediction Details

Protein: RS18_TREPA
Organism: Treponema pallidum
Length: 99 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS18_TREPA.

Description E-value Query
Range
Subject
Range
gi|47087117, gi|... - gi|47087117|ref|NP_997699.1| mitochondrial ribosomal protein S18B [Rattus norvegicus], gi|46237662|e...
116.0 [0..2] [99..58]
RT18B_MOUSE - 28S ribosomal protein S18b, mitochondrial OS=Mus musculus GN=Mrps18b PE=1 SV=1
114.0 [0..2] [99..59]
sp|A0LAG7|RS18_MAGMM - 30S ribosomal protein S18 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpsR...
RS18_MAGMM - 30S ribosomal protein S18 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpsR...
111.0 [0..1] [98..7]
gi|73972105 - gi|73972105|ref|XP_532057.2| PREDICTED: similar to 28S ribosomal protein S18b, mitochondrial precurs...
111.0 [0..2] [99..61]
RT18B_PIG - 28S ribosomal protein S18b, mitochondrial OS=Sus scrofa GN=MRPS18B PE=1 SV=1
110.0 [0..2] [99..61]
gi|84370073, gi|... - gi|84370073|ref|NP_001033613.1| mitochondrial ribosomal protein S18B [Bos taurus], gi|83638632|gb|AA...
110.0 [0..2] [99..61]
RT18B_PANTR - 28S ribosomal protein S18b, mitochondrial OS=Pan troglodytes GN=MRPS18B PE=3 SV=1
109.0 [0..2] [99..61]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDHPSVDL DTHLSSPRES EESAPKKNRQ FYRKKVCRFC TQKLLADYKD PDTLRRFITE  60
   61 RGKILPRRIT GTCAKHQRRV ALEVKRSRAV ALLPFVLTE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.0
Match: 1vs5R
Description: No description for 1vs5R was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle