YRC Public Data Repository - Protein Structure Prediction

Protein:	RS18_TREPA
Organism:	Treponema pallidum
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS18_TREPA.

Description	E-value	Query Range	Subject Range
gi\|47087117, gi\|... - gi\|47087117\|ref\|NP_997699.1\| mitochondrial ribosomal protein S18B [Rattus norvegicus], gi\|46237662\|e...	116.0	[0..2]	[99..58]
RT18B_MOUSE - 28S ribosomal protein S18b, mitochondrial OS=Mus musculus GN=Mrps18b PE=1 SV=1	114.0	[0..2]	[99..59]
sp\|A0LAG7\|RS18_MAGMM - 30S ribosomal protein S18 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpsR... RS18_MAGMM - 30S ribosomal protein S18 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpsR...	111.0	[0..1]	[98..7]
gi\|73972105 - gi\|73972105\|ref\|XP_532057.2\| PREDICTED: similar to 28S ribosomal protein S18b, mitochondrial precurs...	111.0	[0..2]	[99..61]
RT18B_PIG - 28S ribosomal protein S18b, mitochondrial OS=Sus scrofa GN=MRPS18B PE=1 SV=1	110.0	[0..2]	[99..61]
gi\|84370073, gi\|... - gi\|84370073\|ref\|NP_001033613.1\| mitochondrial ribosomal protein S18B [Bos taurus], gi\|83638632\|gb\|AA...	110.0	[0..2]	[99..61]
RT18B_PANTR - 28S ribosomal protein S18b, mitochondrial OS=Pan troglodytes GN=MRPS18B PE=3 SV=1	109.0	[0..2]	[99..61]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDHPSVDL DTHLSSPRES EESAPKKNRQ FYRKKVCRFC TQKLLADYKD PDTLRRFITE  60
   61 RGKILPRRIT GTCAKHQRRV ALEVKRSRAV ALLPFVLTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	1vs5R
Description:	No description for 1vs5R was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits