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View Structure Prediction Details

Protein: RPIA_NITEU
Organism: Nitrosomonas europaea
Length: 219 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPIA_NITEU.

Description E-value Query
Range
Subject
Range
gi|114308819, gi... - gi|71550684|ref|ZP_00670776.1| Ribose 5-phosphate isomerase [Nitrosomonas eutropha C71], gi|71484115...
289.0 [0..1] [219..23]

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Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQDEQKRAV AQAALQYVPT GEIIGIGTGS TANLFIDELA KIKHRIEGAV ASSEVTANRL  60
   61 KQHGIEVLDL NSVGELPVYI DGADEITRNM HMIKGGGGAL TREKIVAAVA RKFICIADQS 120
  121 KLVKVLGKFP LPVEVIPMAR SYVAREITLL GGQPAWRQGF TTDNGNIILD VHNLNIMNPV 180
  181 ELETALNQIA GVVTNGLFAR RAANVLLMGT DQGVETITV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.522879
Match: 1ks2A
Description: D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ribose-5-phosphate isomerase activity 2.23318567990318 bayes_pls_golite062009
6-phosphogluconolactonase activity 1.97756803122763 bayes_pls_golite062009
intramolecular oxidoreductase activity 0.61058174487002 bayes_pls_golite062009
catalytic activity 0.424959044318554 bayes_pls_golite062009
nucleic acid binding 0.281224782944976 bayes_pls_golite062009
binding 0.228090098582514 bayes_pls_golite062009
glucosamine-6-phosphate deaminase activity 0.111185777194415 bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses 0.075853172283603 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle