YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl44
Organism:	Schizosaccharomyces pombe
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl44.

Description	E-value	Query Range	Subject Range
gi\|55596787 - gi\|55596787\|ref\|XP_515559.1\| PREDICTED: mitochondrial ribosomal protein L53 [Pan troglodytes]	121.0	[0..8]	[100..14]
RM53_BOVIN - 39S ribosomal protein L53, mitochondrial OS=Bos taurus GN=MRPL53 PE=1 SV=1	120.0	[0..8]	[100..14]
MRPL53 - mitochondrial ribosomal protein L53	119.0	[0..8]	[100..14]
gi\|73980963 - gi\|73980963\|ref\|XP_855093.1\| PREDICTED: similar to mitochondrial ribosomal protein L53 [Canis famili...	119.0	[0..8]	[100..14]
RM53_PONPY - 39S ribosomal protein L53, mitochondrial precursor - Pongo pygmaeus (Orangutan) RM53_PONAB - 39S ribosomal protein L53, mitochondrial OS=Pongo abelii GN=MRPL53 PE=3 SV=1	118.0	[0..8]	[100..14]
gi\|190408451 - gi\|190408451\|gb\|EDV11716.1\| mitochondrial 60S ribosomal protein L44 [Saccharomyces cerevisiae RM11-1... gi\|151945929 - gi\|151945929\|gb\|EDN64161.1\| YmL44 [Saccharomyces cerevisiae YJM789] RM44_YEAST - 54S ribosomal protein L44, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... MRPL44 - Mitochondrial ribosomal protein of the large subunit	118.0	[0..1]	[99..1]
gi\|109103477 - gi\|109103477\|ref\|XP_001110017.1\| PREDICTED: similar to mitochondrial ribosomal protein L53 [Macaca m...	115.0	[0..8]	[100..14]
gi\|32409303, gi\|... - gi\|38567024\|emb\|CAE76322.1\| probable ribosomal protein YmL44, mitochondrial [Neurospora crassa], gi\|... gi\|85116952 - gi\|85116952\|ref\|XP_965145.1\| hypothetical protein NCU00952 [Neurospora crassa OR74A]	113.0	[0..1]	[98..1]
gi\|169602849, gi... - gi\|169602849\|ref\|XP_001794846.1\| hypothetical protein SNOG_04427 [Phaeosphaeria nodorum SN15], gi\|11...	113.0	[0..1]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFGYINKLS ILNVNPFSKA SQSAKLLLAV ASKETSNSLY GLNLITSLAS KDTNSKPSVE  60
   61 VVYKDGKKLT VDPTKMNIGR LTELIDDYSK TLKFKEMMQK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.75
Match:	1s3aA
Description:	NMR Solution Structure of Subunit B8 from Human NADH-Ubiquinone Oxidoreductase Complex I (CI-B8)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.59001390280125	bayes_pls_golite062009
NADH dehydrogenase activity	1.48736996246151	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	1.3540286167577	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	1.19862544729964	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.85308796644905	bayes_pls_golite062009
binding	0.755744666560865	bayes_pls_golite062009
catalytic activity	0.646676412582618	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	0.611043494640205	bayes_pls_golite062009
protein binding	0.376412693567268	bayes_pls_golite062009
transcription regulator activity	0.374519363311304	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: