YRC Public Data Repository - Protein Structure Prediction

Protein:	RL34_ECOLI
Organism:	Escherichia coli
Length:	46 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL34_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|20521263, gi\|... - gi\|50901796\|ref\|XP_463331.1\| B1129G05.2 [Oryza sativa (japonica cultivar-group)], gi\|215768189\|dbj\|B...	75.0	[0..2]	[44..104]
gi\|79313225, gi\|... - gi\|79313225\|ref\|NP_001030692.1\| structural constituent of ribosome [Arabidopsis thaliana], gi\|298243...	72.0	[0..2]	[43..105]
gi\|45725013 - gi\|45725013\|emb\|CAG23918.1\| LIN1 protein [Cicer arietinum]	69.0	[0..2]	[43..92]
gi\|85693618, gi\|... - gi\|85712627\|ref\|ZP_01043674.1\| ribosomal protein L34 [Idiomarina baltica OS145], gi\|85693618\|gb\|EAQ3...	64.0	[0..1]	[43..23]
gi\|114675984 - gi\|114675984\|ref\|XP_001161111.1\| PREDICTED: hypothetical protein [Pan troglodytes]	63.0	[0..5]	[41..80]
gi\|83372483, gi\|... - gi\|83372483\|ref\|ZP_00917263.1\| Ribosomal protein L34 [Rhodobacter sphaeroides ATCC 17029], gi\|833668...	63.0	[0..1]	[43..56]
gi\|67915404, gi\|... - gi\|67938427\|ref\|ZP_00530953.1\| Ribosomal protein L34 [Chlorobium phaeobacteroides BS1], gi\|67915404\|...	63.0	[0..1]	[45..24]
gi\|69286891, gi\|... - gi\|69286891\|ref\|ZP_00617672.1\| Ribosomal protein L34 [Kineococcus radiotolerans SRS30216], gi\|679867...	62.0	[0..2]	[43..145]
gi\|68355922 - gi\|68355922\|ref\|XP_691339.1\| PREDICTED: hypothetical protein [Danio rerio]	62.0	[0..5]	[43..82]
gi\|49652964, gi\|... - gi\|50413677\|ref\|XP_457299.1\| hypothetical protein DEHA0B07898g [Debaryomyces hansenii CBS767], gi\|49... gi\|49652964 - gi\|49652964\|emb\|CAG85302.1\| DEHA2B07876p [Debaryomyces hansenii]	60.0	[0..4]	[43..82]

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Predicted Domain #1

Region A:
Residues: [1-46]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRTFQPSVL KRNRSHGFRA RMATKNGRQV LARRRAKGRA RLTVSK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits