YRC Public Data Repository - Protein Structure Prediction

Protein:	REPJ_ECOLX
Organism:	Escherichia coli
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REPJ_ECOLX.

Description	E-value	Query Range	Subject Range
RECA_NEIFL - Protein RecA (Fragment) OS=Neisseria flavescens GN=recA PE=3 SV=1	204.0	[0..1]	[279..5]
gi\|61097701, gi\|... - gi\|61097701\|emb\|CAI38695.1\| recombinase A [Chromobacterium violaceum], gi\|61097691\|emb\|CAI38690.1\| r... gi\|61097701\|emb\|... - recombinase A [Chromobacterium violaceum]	204.0	[0..1]	[279..14]
RECA_NEIMU - Protein RecA (Fragment) OS=Neisseria mucosa GN=recA PE=3 SV=1	204.0	[0..1]	[279..5]
gi\|25300506 - gi\|25300506\|pir\|\|G97585 reca protein (recombinase a) [imported] - Agrobacterium tumefaciens (strain ... gi\|15156992, gi\|... - gi\|15889174\|ref\|NP_354855.1\| recombinase A [Agrobacterium tumefaciens str. C58], gi\|15156992\|gb\|AAK8...	203.0	[0..1]	[279..92]
gi\|45176, gi\|7443875 - pir\|\|S24745 recombination protein recA - Neisseria meningitidis (strain P63) (fragment), gi\|45176\|em...	203.0	[0..1]	[279..5]
RECA_NEIPO - Protein RecA (Fragment) OS=Neisseria polysaccharea GN=recA PE=3 SV=2 gi\|44979, gi\|1354915 - gi\|44979\|emb\|CAA46054.1\| reca peptidase [Neisseria gonorrhoeae], gi\|1354915\|gb\|AAB49193.1\| RecA [Nei... RECA_NEILA - Protein RecA (Fragment) OS=Neisseria lactamica GN=recA PE=3 SV=2 gi\|45054, gi\|744... - gi\|7443877\|pir\|\|S24742 recombination protein recA - Neisseria meningitidis (fragment), gi\|45247\|emb...	203.0	[0..1]	[279..5]
RECA_ACIFR - Protein RecA OS=Acidithiobacillus ferrooxidans GN=recA PE=3 SV=1	202.0	[0..1]	[279..28]
gi\|90309945, gi\|... - gi\|90408944\|ref\|ZP_01217078.1\| putative RecA protein [Psychromonas sp. CNPT3], gi\|90309945\|gb\|EAS380...	202.0	[0..1]	[279..30]
gi\|1354927 - gi\|1354927\|gb\|AAB49199.1\| RecA [Neisseria pharyngis var. flava] RECA_NEIPH - Protein RecA (Fragment) OS=Neisseria pharyngis GN=recA PE=3 SV=1	202.0	[0..1]	[279..5]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATHKPINIL EAFAAAPPPL DYVLPNMVAG TVGALVSPGG AGKSMLALQL AAQIAGGPDL  60
   61 LEVGELPTGP VIYLPAEDPP TAIHHRLHAL GAHLSAEERQ AVADGLLIQP LIGSLPNIMA 120
  121 PEWFDGLKRA AEGRRLMVLD TLRRFHIEEE NASGPMAQVI GRMEAIAADT GCSIVFLHHA 180
  181 SKGAAMMGAG DQQQASRGSS VLVDNIRWQS YLSSMTSAEA EEWGVDDDQR RFFVRFGVSK 240
  241 ANYGAPFADR WFRRHDGGVL KPAVLERQRK SKGVPRGEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.045757
Match:	1g8yA
Description:	Hexameric replicative helicase repA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.470983068319171	bayes_pls_golite062009
hydrolase activity	0.0582794297634999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: