YRC Public Data Repository - Protein Structure Prediction

Protein:	RBSK_ECOLI
Organism:	Escherichia coli
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBSK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|28203058, gi\|... - gi\|28210620\|ref\|NP_781564.1\| ribokinase [Clostridium tetani E88], gi\|28203058\|gb\|AAO35501.1\| ribokin...	286.0	[0..2]	[309..1]
gi\|20515184, gi\|... - gi\|20806728\|ref\|NP_621899.1\| ribokinase family sugar kinase [Thermoanaerobacter tengcongensis MB4], ... gi\|20806728 - gi\|20806728\|ref\|NP_621899.1\| Sugar kinase, ribokinase family [Thermoanaerobacter tengcongensis MB4] gi\|254478103, gi... - gi\|254478103\|ref\|ZP_05091486.1\| ribokinase [Carboxydibrachium pacificum DSM 12653], gi\|223490092\|ref...	270.0	[0..6]	[308..3]
gi\|106882307, gi... - gi\|119944129\|ref\|YP_941809.1\| ribokinase [Psychromonas ingrahamii 37], gi\|119862733\|gb\|ABM02210.1\| r...	270.0	[0..6]	[307..3]
gi\|52424338, gi\|... - gi\|52424338\|ref\|YP_087475.1\| RbsK protein [Mannheimia succiniciproducens MBEL55E], gi\|52306390\|gb\|AA...	269.0	[0..5]	[308..6]
gi\|242258203, gi... - gi\|242258203\|ref\|ZP_04803029.1\| ribokinase [Thermoanaerobacter sp. X513], gi\|242230274\|gb\|EES32659.1... gi\|241904638, gi... - gi\|241904638\|ref\|ZP_04789317.1\| ribokinase [Thermoanaerobacter brockii subsp. finnii Ako-1], gi\|2418... gi\|167038425, gi... - gi\|76797420\|ref\|ZP_00779739.1\| Ribokinase, bacterial [Thermoanaerobacter ethanolicus ATCC 33223], gi... gi\|167038832, gi... - gi\|167038832\|ref\|YP_001661817.1\| ribokinase [Thermoanaerobacter sp. X514], gi\|166853072\|gb\|ABY91481....	265.0	[0..6]	[308..3]
gi\|91224727, gi\|... - gi\|91224727\|ref\|ZP_01259987.1\| ribokinase [Vibrio alginolyticus 12G01], gi\|91190273\|gb\|EAS76542.1\| r...	265.0	[0..6]	[308..3]
gi\|28809384, gi\|... - gi\|28900938\|ref\|NP_800593.1\| ribokinase [Vibrio parahaemolyticus RIMD 2210633], gi\|28809384\|dbj\|BAC6... gi\|28809384 - gi\|28809384\|dbj\|BAC62426.1\| ribokinase [Vibrio parahaemolyticus RIMD 2210633] gi\|149750024, gi... - gi\|153836675\|ref\|ZP_01989342.1\| ribokinase [Vibrio parahaemolyticus AQ3810], gi\|149750024\|gb\|EDM6076...	263.0	[0..6]	[308..3]
gi\|227119309, gi... - gi\|75824935\|ref\|ZP_00754371.1\| COG0524: Sugar kinases, ribokinase family [Vibrio cholerae O395], gi\|... gi\|121630645, gi... - gi\|75815451\|ref\|ZP_00745959.1\| COG0524: Sugar kinases, ribokinase family [Vibrio cholerae V52], gi\|1... gi\|11356074 - pir\|\|D82497 ribokinase VCA0131 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|121586869, gi... - gi\|121586869\|ref\|ZP_01676650.1\| ribokinase [Vibrio cholerae 2740-80], gi\|121548912\|gb\|EAX58953.1\| ri... gi\|153221870, gi... - gi\|153221870\|ref\|ZP_01952735.1\| ribokinase [Vibrio cholerae MAK 757], gi\|124119363\|gb\|EAY38106.1\| ri... gi\|126511740, gi... - gi\|153817698\|ref\|ZP_01970365.1\| ribokinase [Vibrio cholerae NCTC 8457], gi\|126511740\|gb\|EAZ74334.1\| ... gi\|227010899, gi... - gi\|227811757\|ref\|YP_002811767.1\| ribokinase [Vibrio cholerae M66-2], gi\|227010899\|gb\|ACP07110.1\| rib... gi\|9657519, gi\|1... - gi\|9657519\|gb\|AAF96045.1\| ribokinase [Vibrio cholerae O1 biovar eltor str. N16961], gi\|15600902\|ref\|... gi\|75830920, gi\|... - gi\|75830920\|ref\|ZP_00760190.1\| COG0524: Sugar kinases, ribokinase family [Vibrio cholerae MO10], gi\|... gi\|229357053, gi... - gi\|229506702\|ref\|ZP_04396211.1\| ribokinase [Vibrio cholerae BX 330286], gi\|229357053\|gb\|EEO21971.1\| ... gi\|229352949, gi... - gi\|229510504\|ref\|ZP_04399984.1\| ribokinase [Vibrio cholerae B33], gi\|229352949\|gb\|EEO17889.1\| riboki... gi\|229345401, gi... - gi\|229517365\|ref\|ZP_04406810.1\| ribokinase [Vibrio cholerae RC9], gi\|229345401\|gb\|EEO10374.1\| riboki... gi\|229371661, gi... - gi\|229605175\|ref\|YP_002875879.1\| ribokinase [Vibrio cholerae MJ-1236], gi\|229371661\|gb\|ACQ62083.1\| r...	261.0	[0..6]	[308..3]
gi\|37524091, gi\|... - gi\|37524091\|ref\|NP_927435.1\| ribokinase [Photorhabdus luminescens subsp. laumondii TTO1], gi\|3678351...	260.0	[0..2]	[308..1]
gi\|254227589, gi... - gi\|75855471\|ref\|ZP_00763121.1\| COG0524: Sugar kinases, ribokinase family [Vibrio sp. Ex25], gi\|25422...	260.0	[0..6]	[308..3]

Back

Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNAGSLVVL GSINADHILN LQSFPTPGET VTGNHYQVAF GGKGANQAVA AGRSGANIAF  60
   61 IACTGDDSIG ESVRQQLATD NIDITPVSVI KGESTGVALI FVNGEGENVI GIHAGANAAL 120
  121 SPALVEAQRE RIANASALLM QLESPLESVM AAAKIAHQNK TIVALNPAPA RELPDELLAL 180
  181 VDIITPNETE AEKLTGIRVE NDEDAAKAAQ VLHEKGIRTV LITLGSRGVW ASVNGEGQRV 240
  241 PGFRVQAVDT IAAGDTFNGA LITALLEEKP LPEAIRFAHA AAAIAVTRKG AQPSVPWREE 300
  301 IDAFLDRQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.522879
Match:	1gqtA
Description:	Ribokinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribokinase activity	4.13972810632318	bayes_pls_golite062009
carbohydrate kinase activity	3.53872211951287	bayes_pls_golite062009
kinase activity	2.44230326483029	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.43969902311075	bayes_pls_golite062009
transferase activity	2.15883296431019	bayes_pls_golite062009
phosphofructokinase activity	2.05034657907701	bayes_pls_golite062009
catalytic activity	1.74474587246986	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	1.01768986812996	bayes_pls_golite062009
binding	0.750579388499649	bayes_pls_golite062009
nucleic acid binding	0.43271347210671	bayes_pls_golite062009
DNA binding	0.0886731070705062	bayes_pls_golite062009
transcription regulator activity	0.0561488099067549	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: