YRC Public Data Repository - Protein Structure Prediction

Protein:	PTYA_ECOLI, PTMA...
Organism:	Escherichia coli
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTYA_ECOLI, PTMA....

Description	E-value	Query Range	Subject Range
gi\|51893450, gi\|... - gi\|51893450\|ref\|YP_076141.1\| putative PTS system, IIA component [Symbiobacterium thermophilum IAM 14...	155.0	[0..3]	[144..476]
gi\|41584042, gi\|... - gi\|42519753\|ref\|NP_965683.1\| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, f...	151.0	[0..1]	[147..1]
gi\|227902793, gi... - gi\|227902793\|ref\|ZP_04020598.1\| PTS system, fructose-specific enzyme II [Lactobacillus acidophilus A... gi\|58338030, gi\|... - gi\|58338030\|ref\|YP_194615.1\| PTS system, fructose-specific enzyme II [Lactobacillus acidophilus NCFM...	149.0	[0..1]	[147..1]
gi\|56420373, gi\|... - gi\|56420373\|ref\|YP_147691.1\| PTS system, fructose-specific enzyme II, BC component [Geobacillus kaus... gi\|47076798 - gi\|47076798\|dbj\|BAD18340.1\| PTS system, fructose C-specific enzyme II, BC component [Geobacillus kau...	148.0	[0..1]	[144..1]
gi\|152976110, gi... - gi\|89202202\|ref\|ZP_01180931.1\| Phosphotransferase system PTS, fructose-specific IIB subunit:PTS syst...	148.0	[0..1]	[146..1]
gi\|103423772, gi... - gi\|104774691\|ref\|YP_619671.1\| PTS system, fructose-specific enzyme IIABC component [Lactobacillus de...	147.0	[0..1]	[147..1]
gi\|116630280, gi... - gi\|23002973\|ref\|ZP_00046644.1\| hypothetical protein Lgas_03000980 [Lactobacillus gasseri ATCC 33323]... gi\|226819377 - gi\|226819377\|ref\|ZP_03808496.1\| fusion of IIA, IIB and IIC component of mannitol/fructose-specific p... gi\|23002973 - gi\|23002973\|ref\|ZP_00046644.1\| COG1299: Phosphotransferase system, fructose-specific IIC component [...	147.0	[0..1]	[147..1]
gi\|62516288, gi\|... - gi\|62516288\|ref\|ZP_00387645.1\| COG1299: Phosphotransferase system, fructose-specific IIC component [...	147.0	[0..1]	[147..1]
gi\|52003251, gi\|... - gi\|52785415\|ref\|YP_091244.1\| hypothetical protein BLi01654 [Bacillus licheniformis ATCC 14580], gi\|5...	146.0	[0..1]	[146..1]
gi\|27358835, gi\|... - gi\|27367266\|ref\|NP_762793.1\| phosphotransferase system mannitol [Vibrio vulnificus CMCP6], gi\|273588... gi\|37676991, gi\|... - gi\|37676991\|ref\|NP_937387.1\| phosphotransferase system mannitol/fructose-specific IIA component [Vib...	146.0	[0..3]	[145..2]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSDYFPES SISVIHSAKD WQEAIDFSMV SLLDKNYISE NYIQAIKDST INNGPYYILA  60
   61 PGVAMPHARP ECGALKTGMS LTLLEQGVYF PGNDEPIKLL IGLSAADADS HIGAIQALSE 120
  121 LLCEEEILEQ LLTASSEKQL ADIISRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	2oq3A
Description:	No description for 2oq3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits