YRC Public Data Repository - Protein Structure Prediction

Protein:	PTVA_ECOLI, PTFA...
Organism:	Escherichia coli
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTVA_ECOLI, PTFA....

Description	E-value	Query Range	Subject Range
gi\|41584042, gi\|... - gi\|42519753\|ref\|NP_965683.1\| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, f...	166.0	[0..3]	[148..6]
gi\|152976110, gi... - gi\|89202202\|ref\|ZP_01180931.1\| Phosphotransferase system PTS, fructose-specific IIB subunit:PTS syst...	165.0	[0..2]	[147..5]
gi\|52003251, gi\|... - gi\|52785415\|ref\|YP_091244.1\| hypothetical protein BLi01654 [Bacillus licheniformis ATCC 14580], gi\|5...	164.0	[0..2]	[144..5]
gi\|227902793, gi... - gi\|227902793\|ref\|ZP_04020598.1\| PTS system, fructose-specific enzyme II [Lactobacillus acidophilus A... gi\|58338030, gi\|... - gi\|58338030\|ref\|YP_194615.1\| PTS system, fructose-specific enzyme II [Lactobacillus acidophilus NCFM...	163.0	[0..3]	[148..6]
gi\|56420373, gi\|... - gi\|56420373\|ref\|YP_147691.1\| PTS system, fructose-specific enzyme II, BC component [Geobacillus kaus... gi\|47076798 - gi\|47076798\|dbj\|BAD18340.1\| PTS system, fructose C-specific enzyme II, BC component [Geobacillus kau...	163.0	[0..3]	[143..6]
gi\|103423772, gi... - gi\|104774691\|ref\|YP_619671.1\| PTS system, fructose-specific enzyme IIABC component [Lactobacillus de...	161.0	[0..3]	[148..6]
gi\|47569241, gi\|... - gi\|47569241\|ref\|ZP_00239927.1\| PTS system, fructose-specific family, IIABC components [Bacillus cere...	161.0	[0..2]	[144..5]
gi\|62516288, gi\|... - gi\|62516288\|ref\|ZP_00387645.1\| COG1299: Phosphotransferase system, fructose-specific IIC component [...	161.0	[0..3]	[148..6]
gi\|49478953, gi\|... - gi\|49478953\|ref\|YP_037782.1\| PTS fructose-specific enzyme IIBC component [Bacillus thuringiensis ser...	161.0	[0..2]	[144..5]
gi\|49180491, gi\|... - gi\|49186564\|ref\|YP_029816.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis str. ... gi\|170706772, gi... - gi\|170706772\|ref\|ZP_02897230.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|170666744, gi... - gi\|170689286\|ref\|ZP_02880481.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|167636059, gi... - gi\|167636059\|ref\|ZP_02394365.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|254759436 - gi\|254759436\|ref\|ZP_05211461.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|254739550 - gi\|254739550\|ref\|ZP_05197245.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|254683577 - gi\|254683577\|ref\|ZP_05147437.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st...	161.0	[0..2]	[144..5]

Back

Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALTASCID LNIQGNGAYS VLKQLATIAL QNGFITDSHQ FLQTLLLREK MHSTGFGSGV  60
   61 AVPHGKSACV KQPFVLFARK AQAIDWKASD GEDVNCWICL GVPQSGEEDQ VKIIGTLCRK 120
  121 IIHKEFIHQL QQGDTDQVLA LLNQTLSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	2a0jA
Description:	Crystal Structure of Nitrogen Regulatory Protein IIA-Ntr from Neisseria meningitidis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits