YRC Public Data Repository - Protein Structure Prediction

Protein:	CE40901
Organism:	Caenorhabditis elegans
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40901.

Description	E-value	Query Range	Subject Range
CE36100 - L-methionine-alpha-deamino-gamma-mercaptomethane lyase status:Partially_confirmed UniProt:O02215 pro...	181.0	[0..1]	[169..1]
gi\|53797182 - ref\|ZP_00358038.1\| COG2873: O-acetylhomoserine sulfhydrylase [Chloroflexus aurantiacus] gi\|76166441, gi\|... - gi\|76258712\|ref\|ZP_00766366.1\| O-acetylhomoserine/O-acetylserine sulfhydrylase [Chloroflexus auranti...	164.0	[0..10]	[170..9]
gi\|72397073, gi\|... - gi\|73669911\|ref\|YP_305926.1\| O-acetylhomoserine (thiol)-lyase [Methanosarcina barkeri str. Fusaro], ...	163.0	[0..39]	[170..17]
gi\|68549865, gi\|... - gi\|68549865\|ref\|ZP_00589323.1\| O-acetylhomoserine/O-acetylserine sulfhydrylase [Pelodictyon phaeocla...	161.0	[0..22]	[170..6]
gi\|125974346, gi... - gi\|67874928\|ref\|ZP_00504479.1\| O-acetylhomoserine/O-acetylserine sulfhydrylase [Clostridium thermoce...	159.0	[0..57]	[170..1]
gi\|19916694, gi\|... - gi\|20091539\|ref\|NP_617614.1\| O-acetylhomoserine (thiol)-lyase [Methanosarcina acetivorans C2A], gi\|1...	158.0	[0..60]	[170..20]
gi\|72122130, gi\|... - gi\|73538793\|ref\|YP_299160.1\| O-acetylhomoserine/O-acetylserine sulfhydrylase [Ralstonia eutropha JMP...	158.0	[0..39]	[170..24]
gi\|189499781, gi... - gi\|67938667\|ref\|ZP_00531189.1\| O-acetylhomoserine/O-acetylserine sulfhydrylase [Chlorobium phaeobact...	158.0	[0..29]	[170..13]
gi\|78043055, gi\|... - gi\|78043055\|ref\|YP_360723.1\| O-acetylhomoserine/O-acetylserine sulfhydrylase [Carboxydothermus hydro...	157.0	[0..62]	[170..1]
gi\|73661560, gi\|... - gi\|73661560\|ref\|YP_300341.1\| O-acetylhomoserine sulfhydrylase [Staphylococcus saprophyticus subsp. s...	156.0	[0..57]	[170..1]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRTDNLSDL ASARDYWRTD KYISFVITFQ FYLLLDTMSD SFNWPAGNNE ARERLGEKFE  60
   61 SLHLDSRIST SHAKPLSNAD PVVVPIYHSS TYRFKTVDQF NEDNHGANFV YRRCGNPTTE 120
  121 NVEVVINEIE GGAGSLLYNS GLAAISAVFL EFLSSGAHMI VMNPIYSDSY MS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1ibjA
Description:	Cystathionine beta-lyase, CBL
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits