YRC Public Data Repository - Protein Structure Prediction

Protein:	PAAD_VIBCH
Organism:	Vibrio cholerae
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAAD_VIBCH.

Description	E-value	Query Range	Subject Range
gi\|226942951, gi... - gi\|67157818\|ref\|ZP_00418963.1\| Flavoprotein [Azotobacter vinelandii AvOP], gi\|67085087\|gb\|EAM04563.1... gi\|53610053, gi\|... - gi\|67157818\|ref\|ZP_00418963.1\| Flavoprotein [Azotobacter vinelandii AvOP], ref\|ZP_00088579.2\| COG016...	248.0	[0..3]	[211..1]
gi\|77461207, gi\|... - gi\|77461207\|ref\|YP_350714.1\| aromatic acid decarboxylase [Pseudomonas fluorescens Pf0-1], gi\|7738521...	247.0	[0..1]	[211..1]
gi\|49079190 - gi\|49079190\|gb\|AAT49864.1\| PA4019 [synthetic construct]	246.0	[0..3]	[211..1]
PAAD_PSEAE - Probable aromatic acid decarboxylase OS=Pseudomonas aeruginosa GN=PA4019 PE=3 SV=1 gi\|46164624, gi\|... - gi\|46164624\|ref\|ZP_00137461.2\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Pseudomonas ae... UBIX_PSEAE - Flavin prenyltransferase UbiX OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / L... gi\|254242703, gi... - gi\|84325151\|ref\|ZP_00973191.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Pseudomonas ae... gi\|84319239, gi\|... - gi\|84319239\|ref\|ZP_00967640.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Pseudomonas ae... gi\|218889700, gi... - gi\|218889700\|ref\|YP_002438564.1\| aromatic acid decarboxylase [Pseudomonas aeruginosa LESB58], gi\|218... gi\|107103534 - gi\|107103534\|ref\|ZP_01367452.1\| hypothetical protein PaerPA_01004604 [Pseudomonas aeruginosa PACS2]	246.0	[0..3]	[211..1]
gi\|229341199, gi... - gi\|229521605\|ref\|ZP_04411023.1\| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX [Vibrio cholerae T... tr\|A0A085RTE9\|A0... - Polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein OS=Vibrio cholerae ... gi\|116220720, gi... - gi\|75820167\|ref\|ZP_00750221.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera...	245.0	[0..3]	[211..1]
gi\|116189430, gi... - gi\|75830527\|ref\|ZP_00759803.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera...	245.0	[0..3]	[211..1]
gi\|116216911, gi... - gi\|75822781\|ref\|ZP_00752347.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera...	244.0	[0..3]	[211..1]
gi\|75827796 - gi\|75827796\|ref\|ZP_00757231.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera... gi\|75815975 - gi\|75815975\|ref\|ZP_00746460.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera... tr\|A0A085PIW9\|A0... - Polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein OS=Vibrio cholerae ...	244.0	[0..3]	[211..1]
gi\|70732771, gi\|... - gi\|70732771\|ref\|YP_262534.1\| aromatic acid decarboxylase [Pseudomonas fluorescens Pf-5], gi\|68347070...	243.0	[0..1]	[211..1]
gi\|152985350, gi... - gi\|94417048\|ref\|ZP_01296870.1\| hypothetical protein PaerP_01001244 [Pseudomonas aeruginosa PA7], gi\|...	242.0	[0..3]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMNNNRTIT LAWTGASGAP YGLRLLQCLL AADYQVYLLI SSAARVVLAT EHGLKLPANP  60
   61 EAAQAALVEH LGCASDKLVV CGKEDWFSPV ASGSAAPKQM VVCPCSAGSV AAIAHGMSDN 120
  121 LIERAADVVL KERGQLLLVV RETPFSTLHL ENMLKLSHMG VTIMPAAPGF YHQPQSIDDL 180
  181 VDFMVARILD HLGIEQALVP RWGYDQRVRG E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.522879
Match:	1sbzA
Description:	Crystal Structure of dodecameric FMN-dependent Ubix-like Decarboxylase from Escherichia coli O157:H7
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity	5.88631349530005	bayes_pls_golite062009
carboxy-lyase activity	2.27469953971238	bayes_pls_golite062009
catalytic activity	1.88716391063227	bayes_pls_golite062009
carbon-carbon lyase activity	1.67751595868044	bayes_pls_golite062009
phosphopantothenoylcysteine decarboxylase activity	1.6488492075417	bayes_pls_golite062009
lyase activity	0.646446561158526	bayes_pls_golite062009
phosphopantothenate--cysteine ligase activity	0.35505046579356	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: