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View Structure Prediction Details

Protein: PA2AP_PROFL
Organism: Trimeresurus flavoviridis
Length: 138 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PA2AP_PROFL.

Description E-value Query
Range
Subject
Range
gi|45934756, gi|... - gi|45934756|gb|AAS79430.1| phospholipase A2 [Sistrurus catenatus tergeminus], gi|166012678|gb|ABY779...
190.0 [0..1] [138..1]
PA2AH_CROVV - Acidic phospholipase A2 Cvv-E6h OS=Crotalus viridis viridis PE=2 SV=1
189.0 [0..1] [138..1]
PA2BB_GLOHA - Basic phospholipase A2 B OS=Gloydius halys PE=1 SV=2
189.0 [0..1] [138..1]
PA2A6_TRIGA - Acidic phospholipase A2 6 OS=Trimeresurus gramineus PE=3 SV=1
189.0 [0..1] [138..1]
PA2BW_PROFL - Basic phospholipase A2 PL-X' OS=Protobothrops flavoviridis PE=2 SV=1
188.0 [0..1] [138..1]
PA2AF_TRIST - Acidic phospholipase A2 Ts-A6 OS=Trimeresurus stejnegeri PE=1 SV=1
187.0 [0..1] [138..1]
PA2A_CROAT - Acidic phospholipase A2 OS=Crotalus atrox PE=1 SV=2
187.0 [0..1] [138..1]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLWIMAVL LVGVKGHLMQ FENMIKKVTG RSGIWWYGSY GCYCGKGGEG RPQDPSDRCC  60
   61 FVHDCCYGKV TGCDPKDDFY IYSSENGDIV CGDDDLCKKE VCECDKAAAI CFRDNMDTYQ 120
  121 NKYWFYPASN CKEESEPC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.30103
Match: 1vapA
Description: Snake phospholipase A2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phospholipase A2 activity 5.6430968678228 bayes_pls_golite062009
phospholipase activity 5.38445724291842 bayes_pls_golite062009
calcium-dependent phospholipase A2 activity 4.05813159633475 bayes_pls_golite062009
lipase activity 3.51338748073942 bayes_pls_golite062009
cell surface binding 3.03976629465117 bayes_pls_golite062009
carboxylesterase activity 2.68079964970429 bayes_pls_golite062009
receptor binding 2.23831898285432 bayes_pls_golite062009
binding 1.6033670102211 bayes_pls_golite062009
protein binding 1.47445022237761 bayes_pls_golite062009
hydrolase activity 1.32355620269997 bayes_pls_golite062009
catalytic activity 0.975181414554529 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.92788550115064 bayes_pls_golite062009
glycosaminoglycan binding 0.453108206649759 bayes_pls_golite062009
heparin binding 0.43572775235244 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle