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View Structure Prediction Details

Protein: OTX2_RAT
Organism: Rattus norvegicus
Length: 70 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OTX2_RAT.

Description E-value Query
Range
Subject
Range
gi|47230174 - gi|47230174|emb|CAG10588.1| unnamed protein product [Tetraodon nigroviridis]
115.0 [0..1] [70..234]
gi|34451975 - gi|34451975|gb|AAQ72465.1| Otx2 [Takifugu rubripes]
111.0 [0..1] [70..178]
gi|76668733 - gi|76668733|ref|XP_583880.2| PREDICTED: similar to orthodenticle 2 isoform a isoform 1 [Bos taurus]
111.0 [0..1] [70..181]
gi|109501543, gi... - gi|27699029|ref|XP_224009.1| PREDICTED: similar to orthodenticle 2 isoform b [Rattus norvegicus], gi...
OTX2 - orthodenticle homeobox 2
gi|114653189, gi... - gi|114653191|ref|XP_001163193.1| PREDICTED: orthodenticle 2 isoform 5 [Pan troglodytes], gi|11465318...
tr|G3HRU9|G3HRU9... - Homeobox protein OTX2 OS=Cricetulus griseus GN=I79_013571 PE=4 SV=1
111.0 [0..1] [70..177]
gi|61098455, gi|... - gi|61098455|ref|NP_989851.2| orthodenticle homeobox 2 [Gallus gallus], gi|48479262|gb|AAT44902.1| ho...
110.0 [0..1] [70..177]
gi|399720 - gi|399720|gb|AAB27580.1| Otx2=homeodomain containing [mice, embryos, Peptide, 289 aa]
OTX2_MOUSE - Homeobox protein OTX2 OS=Mus musculus GN=Otx2 PE=1 SV=1
110.0 [0..1] [70..177]
gi|73963013 - gi|73963013|ref|XP_547830.2| PREDICTED: similar to orthodenticle 2 isoform b isoform 1 [Canis famili...
110.0 [0..1] [70..177]
gi|82466502 - gi|82466502|gb|ABB76286.1| otx2 [Astatotilapia burtoni]
110.0 [0..1] [70..177]
OTX5B_XENLA - Homeobox protein otx5-B OS=Xenopus laevis GN=otx5-b PE=2 SV=1
109.0 [0..1] [70..179]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYTQASGYS QGYAGSTSYF GGMDCGSYLT PMHHQLPGPG ATLSPMGTNA VTSHLNQSPA  60
   61 SLSTQGYGAS 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 22.102373
Match: PF03529.4
Description: No description for PF03529.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.429 N/A N/A a.60.2 RuvA domain 2-like
View Download 0.416 N/A N/A a.4.8 Ribosomal protein S18
View Download 0.409 N/A N/A a.48.3 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View Download 0.409 N/A N/A a.48.3 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View Download 0.373 N/A N/A a.60.2 RuvA domain 2-like
View Download 0.361 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.333 N/A N/A a.4.8 Ribosomal protein S18
View Download 0.248 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.238 N/A N/A a.4.5 "Winged helix" DNA-binding domain


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