YRC Public Data Repository - Protein Structure Prediction

Protein:	OTX2_RAT
Organism:	Rattus norvegicus
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OTX2_RAT.

Description	E-value	Query Range	Subject Range
gi\|47230174 - gi\|47230174\|emb\|CAG10588.1\| unnamed protein product [Tetraodon nigroviridis]	115.0	[0..1]	[70..234]
gi\|34451975 - gi\|34451975\|gb\|AAQ72465.1\| Otx2 [Takifugu rubripes]	111.0	[0..1]	[70..178]
gi\|76668733 - gi\|76668733\|ref\|XP_583880.2\| PREDICTED: similar to orthodenticle 2 isoform a isoform 1 [Bos taurus]	111.0	[0..1]	[70..181]
gi\|109501543, gi... - gi\|27699029\|ref\|XP_224009.1\| PREDICTED: similar to orthodenticle 2 isoform b [Rattus norvegicus], gi... OTX2 - orthodenticle homeobox 2 gi\|114653189, gi... - gi\|114653191\|ref\|XP_001163193.1\| PREDICTED: orthodenticle 2 isoform 5 [Pan troglodytes], gi\|11465318... tr\|G3HRU9\|G3HRU9... - Homeobox protein OTX2 OS=Cricetulus griseus GN=I79_013571 PE=4 SV=1	111.0	[0..1]	[70..177]
gi\|61098455, gi\|... - gi\|61098455\|ref\|NP_989851.2\| orthodenticle homeobox 2 [Gallus gallus], gi\|48479262\|gb\|AAT44902.1\| ho...	110.0	[0..1]	[70..177]
gi\|399720 - gi\|399720\|gb\|AAB27580.1\| Otx2=homeodomain containing [mice, embryos, Peptide, 289 aa] OTX2_MOUSE - Homeobox protein OTX2 OS=Mus musculus GN=Otx2 PE=1 SV=1	110.0	[0..1]	[70..177]
gi\|73963013 - gi\|73963013\|ref\|XP_547830.2\| PREDICTED: similar to orthodenticle 2 isoform b isoform 1 [Canis famili...	110.0	[0..1]	[70..177]
gi\|82466502 - gi\|82466502\|gb\|ABB76286.1\| otx2 [Astatotilapia burtoni]	110.0	[0..1]	[70..177]
OTX5B_XENLA - Homeobox protein otx5-B OS=Xenopus laevis GN=otx5-b PE=2 SV=1	109.0	[0..1]	[70..179]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYTQASGYS QGYAGSTSYF GGMDCGSYLT PMHHQLPGPG ATLSPMGTNA VTSHLNQSPA  60
   61 SLSTQGYGAS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.102373
Match:	PF03529.4
Description:	No description for PF03529.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits