YRC Public Data Repository - Protein Structure Prediction

Protein:	OMPN_ECOLI
Organism:	Escherichia coli
Length:	377 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OMPN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|25989456 - gi\|25989456\|gb\|AAL82724.1\| outer membrane protein [Edwardsiella tarda]	250.0	[0..2]	[377..42]
gi\|3273514 - gi\|3273514\|gb\|AAC38644.1\| porin OmpN [Escherichia coli]	245.0	[0..23]	[377..23]
gi\|191165204, gi... - gi\|75231855\|ref\|ZP_00718196.1\| COG3203: Outer membrane protein (porin) [Escherichia coli B7A], gi\|19...	244.0	[0..23]	[377..23]
gi\|73855728, gi\|... - gi\|74312251\|ref\|YP_310670.1\| putative outer membrane protein [Shigella sonnei Ss046], gi\|73855728\|gb...	244.0	[0..23]	[377..23]
gi\|188493532, gi... - gi\|75515033\|ref\|ZP_00737237.1\| COG3203: Outer membrane protein (porin) [Escherichia coli 53638], gi\|... gi\|75259502, gi\|... - gi\|75259502\|ref\|ZP_00730821.1\| COG3203: Outer membrane protein (porin) [Escherichia coli E22], gi\|19... gi\|192959580, gi... - gi\|75239991\|ref\|ZP_00723952.1\| COG3203: Outer membrane protein (porin) [Escherichia coli E110019], g... gi\|194416162, gi... - gi\|75212787\|ref\|ZP_00712785.1\| COG3203: Outer membrane protein (porin) [Escherichia coli B171], gi\|1... gi\|157066538, gi... - gi\|75195494\|ref\|ZP_00705564.1\| COG3203: Outer membrane protein (porin) [Escherichia coli HS], gi\|157... gi\|251784875, gi... - gi\|251784875\|ref\|YP_002999179.1\| hypothetical protein B21_01360 [Escherichia coli BL21], gi\|24237714... gi\|253973351, gi... - gi\|254161450\|ref\|YP_003044558.1\| outer membrane pore protein N, non-specific [Escherichia coli B str... gi\|253977562, gi... - gi\|254288255\|ref\|YP_003054003.1\| outer membrane pore protein N, non-specific [Escherichia coli BL21(... gi\|157155044, gi... - gi\|75190434\|ref\|ZP_00703701.1\| COG3203: Outer membrane protein (porin) [Escherichia coli E24377A], g... gi\|83587750, gi\|... - gi\|83587750\|ref\|ZP_00926376.1\| COG3203: Outer membrane protein (porin) [Escherichia coli 101-1], gi\|... gi\|124527900, gi... - gi\|124527900\|ref\|ZP_01699289.1\| porin, Gram-negative type [Escherichia coli B], gi\|124501064\|gb\|EAY4... gi\|218360674, gi... - gi\|218553906\|ref\|YP_002386819.1\| outer membrane pore protein N, non-specific [Escherichia coli IAI1]... gi\|218351654, gi... - gi\|218694922\|ref\|YP_002402589.1\| outer membrane pore protein N, non-specific [Escherichia coli 55989... gi\|169755216, gi... - gi\|170020288\|ref\|YP_001725242.1\| porin [Escherichia coli ATCC 8739], gi\|169755216\|gb\|ACA77915.1\| por... gi\|209918651, gi... - gi\|209918651\|ref\|YP_002292735.1\| outer membrane protein porin OmpN [Escherichia coli SE11], gi\|20991...	244.0	[0..23]	[377..23]
gi\|82544175, gi\|... - gi\|82544175\|ref\|YP_408122.1\| putative outer membrane protein [Shigella boydii Sb227], gi\|81245586\|gb... gi\|187730461, gi... - gi\|75178657\|ref\|ZP_00698703.1\| COG3203: Outer membrane protein (porin) [Shigella boydii BS512], gi\|1...	243.0	[0..23]	[377..23]
gi\|91072215, gi\|... - gi\|91210641\|ref\|YP_540627.1\| outer membrane protein N precursor [Escherichia coli UTI89], gi\|9107221... gi\|110343174, gi... - gi\|110641582\|ref\|YP_669312.1\| outer membrane protein N precursor [Escherichia coli 536], gi\|11034317... gi\|117623651, gi... - gi\|117623651\|ref\|YP_852564.1\| outer membrane pore protein N, non-specific [Escherichia coli APEC O1]... gi\|75242145, gi\|... - gi\|75242145\|ref\|ZP_00725939.1\| COG3203: Outer membrane protein (porin) [Escherichia coli F11], gi\|19... gi\|227886214, gi... - gi\|227886214\|ref\|ZP_04004019.1\| GBP family general bacterial porin [Escherichia coli 83972], gi\|2278... gi\|237705377, gi... - gi\|237705377\|ref\|ZP_04535858.1\| outer membrane protein N [Escherichia sp. 3_2_53FAA], gi\|226900134\|g... gi\|26108086, gi\|... - gi\|26247684\|ref\|NP_753724.1\| Outer membrane protein N precursor [Escherichia coli CFT073], gi\|261080... gi\|218365102, gi... - gi\|218558333\|ref\|YP_002391246.1\| outer membrane pore protein N, non-specific [Escherichia coli S88],...	243.0	[0..23]	[377..23]
gi\|77979214, gi\|... - gi\|77979214\|ref\|ZP_00834634.1\| COG3203: Outer membrane protein (porin) [Yersinia intermedia ATCC 299...	243.0	[0..1]	[377..2]
gi\|83571040, gi\|... - gi\|83571040\|ref\|ZP_00922482.1\| COG3203: Outer membrane protein (porin) [Shigella dysenteriae 1012], ...	243.0	[0..23]	[377..23]
lcl\|NC_016856.1_... - [gene=ompN] [protein=outer membrane protein N] [protein_id=YP_005237347.1] [location=complement(1559... gi\|16764819, gi\|... - gi\|16764819\|ref\|NP_460434.1\| outer membrane protein N precursor [Salmonella typhimurium LT2], gi\|164... gi\|205327652, gi... - gi\|205327652\|gb\|EDZ14416.1\| outer membrane protein N [Salmonella enterica subsp. enterica serovar 4,... gi\|224584019, gi... - gi\|224584019\|ref\|YP_002637817.1\| outer membrane protein [Salmonella enterica subsp. enterica serovar... gi\|62127693, gi\|... - gi\|62180060\|ref\|YP_216477.1\| outer membrane protein N, non-specific porin [Salmonella enterica subsp...	241.0	[0..1]	[377..1]

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Predicted Domain #1

Region A:
Residues: [1-377]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSKVLALLI PALLAAGAAH AAEVYNKDGN KLDLYGKVDG LHYFSDNSAK DGDQSYARLG  60
   61 FKGETQINDQ LTGYGQWEYN IQANNTESSK NQSWTRLAFA GLKFADYGSF DYGRNYGVMY 120
  121 DIEGWTDMLP EFGGDSYTNA DNFMTGRANG VATYRNTDFF GLVNGLNFAV QYQGNNEGAS 180
  181 NGQEGTNNGR DVRHENGDGW GLSTTYDLGM GFSAGAAYTS SDRTNDQVNH TAAGGDKADA 240
  241 WTAGLKYDAN NIYLATMYSE TRNMTPFGDS DYAVANKTQN FEVTAQYQFD FGLRPAVSFL 300
  301 MSKGRDLHAA GGADNPAGVD DKDLVKYADI GATYYFNKNM STYVDYKINL LDEDDSFYAA 360
  361 NGISTDDIVA LGLVYQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	1osmA
Description:	Porin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	1.53359142384353	bayes_pls_golite062009
substrate-specific transporter activity	0.109053674865783	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: