YRC Public Data Repository - Protein Structure Prediction

Protein:	NUSB_THETN
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUSB_THETN.

Description	E-value	Query Range	Subject Range
gi\|242257187, gi... - gi\|242257187\|ref\|ZP_04802060.1\| NusB antitermination factor [Thermoanaerobacter sp. X513], gi\|242231... gi\|241902801, gi... - gi\|241902801\|ref\|ZP_04787532.1\| NusB antitermination factor [Thermoanaerobacter brockii subsp. finni... NUSB_THEP3 - N utilization substance protein B homolog OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 ... NUSB_THEPX - N utilization substance protein B homolog OS=Thermoanaerobacter sp. (strain X514) GN=nusB PE=3 SV=1	142.0	[0..1]	[140..1]
gi\|88925497, gi\|... - gi\|88944826\|ref\|ZP_01148049.1\| Fmu, rRNA SAM-dependent methyltransferase:NusB antitermination factor...	138.0	[0..1]	[134..1]
gi\|49080752 - gi\|49080752\|gb\|AAT50054.1\| PA4052 [synthetic construct]	136.0	[0..3]	[139..21]
gi\|94417012, gi\|... - gi\|94417012\|ref\|ZP_01296834.1\| hypothetical protein PaerP_01001208 [Pseudomonas aeruginosa PA7], gi\|...	136.0	[0..3]	[139..21]
NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C /... gi\|46164642, gi\|... - gi\|46164642\|ref\|ZP_00205138.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa UCB... gi\|84325185, gi\|... - gi\|84325185\|ref\|ZP_00973225.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa 219... gi\|107103566 - gi\|107103566\|ref\|ZP_01367484.1\| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2] gi\|218889667, gi... - gi\|218889667\|ref\|YP_002438531.1\| transcription antitermination protein NusB [Pseudomonas aeruginosa ... NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa GN=nusB PE=3 SV=1	135.0	[0..3]	[139..21]
gi\|126168872, gi... - gi\|84319131\|ref\|ZP_00967534.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa C37...	134.0	[0..3]	[139..21]
NUSB_BACLD - N utilization substance protein B homolog OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JC...	133.0	[0..1]	[131..1]
gi\|29897509, gi\|... - gi\|30021953\|ref\|NP_833584.1\| sun protein [Bacillus cereus ATCC 14579], gi\|29897509\|gb\|AAP10785.1\| 16...	132.0	[0..3]	[139..2]
gi\|52141623, gi\|... - gi\|52141623\|ref\|YP_085206.1\| sun protein [Bacillus cereus E33L], gi\|51975092\|gb\|AAU16642.1\| sun prot...	132.0	[0..3]	[139..2]
gi\|51856176, gi\|... - gi\|51892487\|ref\|YP_075178.1\| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM 14863], ...	132.0	[0..4]	[130..10]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRTEAREWV VKMLYQYDVS KLPLEKIFEN FYEEHDPGEQ KEYIEGTVRG TVEHLEEIDR  60
   61 EIEKYSKDWP LYRMPRIDLA ILRCSMYEML YGNIPVSISI NEAVEIAKKY STDDSPSFIN 120
  121 GLLGAFVREK GLEEGEANDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	1tztA
Description:	T. maritima NusB, P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	7.08625510047476	bayes_pls_golite062009
transcription regulator activity	3.63525538465601	bayes_pls_golite062009
binding	0.569728786489819	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: