YRC Public Data Repository - Protein Structure Prediction

Protein:	NU4LM_ASCSU
Organism:	Ascaris suum
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NU4LM_ASCSU.

Description	E-value	Query Range	Subject Range
gi\|31873490, gi\|... - gi\|31873490\|emb\|CAD10442.2\| NADH dehydrogenase subunit 4L [Necator americanus], gi\|19111760\|ref\|NP_5...	82.0	[0..1]	[77..1]
gi\|19111748 - gi\|19111748\|ref\|NP_579945.2\|ND4L_15956 NADH dehydrogenase subunit 4L [Ancylostoma duodenale] gi\|219873105, gi... - gi\|225622202\|ref\|YP_002725715.1\| NADH dehydrogenase subunit 4 [Ancylostoma caninum], gi\|219873105\|gb...	82.0	[0..1]	[77..1]
gi\|27543262 - gi\|27543262\|gb\|AAO16419.1\| NADH dehydrogenase subunit 4L [Caenorhabditis elegans]	81.0	[0..1]	[77..1]
gi\|66269527, gi\|... - gi\|91176187\|ref\|YP_537101.1\| NADH dehydrogenase subunit 4L [Anisakis simplex], gi\|66269527\|gb\|AAY431...	80.0	[0..1]	[77..1]
NULM_CAEBR, NU4L... - (Q8HEB9) NADH-ubiquinone oxidoreductase chain 4L (EC 1.6.5.3), NADH-ubiquinone oxidoreductase chain ...	79.0	[0..2]	[77..1]
gi\|116177494, gi... - gi\|116510832\|ref\|YP_817450.1\| NADH dehydrogenase subunit 4L [Heterorhabditis bacteriophora], gi\|1161...	79.0	[0..1]	[77..2]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFIFISFLS LFFKWQRLMF ILISLEFIVM SLFILFSGDL NEMMFFYFMC FSVVSSVLGM  60
   61 VVMVGNVKFY GSDLCLF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.957	a.8.11	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits