YRC Public Data Repository - Protein Structure Prediction

Protein:	MSRB_RALSO
Organism:	Ralstonia solanacearum
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSRB_RALSO.

Description	E-value	Query Range	Subject Range
MSRB_THEEB - Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus elongatus (strain BP-1) GN=msrB P... MSRB_SYNEL - Peptide methionine sulfoxide reductase msrB OS=Synechococcus elongatus GN=msrB PE=3 SV=1	242.0	[0..1]	[126..1]
gi\|115368847, gi... - gi\|115374180\|ref\|ZP_01461467.1\| peptide methionine sulfoxide reductase MsrB [Stigmatella aurantiaca ...	241.0	[0..4]	[126..67]
gi\|83749028, gi\|... - gi\|83749028\|ref\|ZP_00946035.1\| Peptide methionine sulfoxide reductase msrB [Ralstonia solanacearum U... gi\|207743082, gi... - gi\|207743082\|ref\|YP_002259474.1\| peptide methionine sulfoxide reductase related protein [Ralstonia s... gi\|206588761, gi... - gi\|207723560\|ref\|YP_002253959.1\| peptide methionine sulfoxide reductase related protein [Ralstonia s...	241.0	[0..1]	[128..1]
gi\|113526304, gi... - gi\|113867528\|ref\|YP_726017.1\| methionine sulfoxide reductase B [Ralstonia eutropha H16], gi\|11352630...	240.0	[0..1]	[128..1]
gi\|68557802, gi\|... - gi\|94310803\|ref\|YP_584013.1\| methionine sulfoxide reductase B [Ralstonia metallidurans CH34], gi\|933...	239.0	[0..1]	[128..1]
gi\|108764748, gi... - gi\|68562385\|ref\|ZP_00601648.1\| Protein of unknown function DUF25 [Rubrobacter xylanophilus DSM 9941]...	236.0	[0..3]	[127..8]
gi\|110633220, gi... - gi\|69279604\|ref\|ZP_00614410.1\| Protein of unknown function DUF25 [Mesorhizobium sp. BNC1], gi\|681898...	236.0	[0..3]	[128..10]
gi\|116699061, gi... - gi\|71544925\|ref\|ZP_00665902.1\| Protein of unknown function DUF25 [Syntrophobacter fumaroxidans MPOB]...	235.0	[0..2]	[126..56]
gi\|45519067, gi\|... - gi\|73541089\|ref\|YP_295609.1\| methionine sulfoxide reductase B [Ralstonia eutropha JMP134], gi\|721185...	235.0	[0..1]	[128..1]
gi\|86558601, gi\|... - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Synechococcus sp. JA-2-3B'a(2-13)], g... gi\|86610059 - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Cyanobacteria bacterium Yellowstone B...	234.0	[0..4]	[126..40]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIEKTDAEW RDQLSDIEYR VTREAATERP FTGRYWDHWA RGIYHCVCCG TPLFESSTKF  60
   61 DAGCGWPSYF APINGEVIAE KTDHSHGMVR IEVQCKQCGA HLGHVFEDGP APTGLRYCIN 120
  121 SAALKFGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	1l1dA
Description:	C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	5.90194589149201	bayes_pls_golite062009
protein-methionine-R-oxide reductase activity	5.64196103816384	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	3.02342037380774	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	1.80676476343543	bayes_pls_golite062009
binding	1.67290562818139	bayes_pls_golite062009
catalytic activity	0.566791077255496	bayes_pls_golite062009
nucleic acid binding	0.555078494441175	bayes_pls_golite062009
ion binding	0.415760364192452	bayes_pls_golite062009
cation binding	0.404651661251597	bayes_pls_golite062009
metal ion binding	0.404651661251597	bayes_pls_golite062009
DNA binding	0.215568693193579	bayes_pls_golite062009
transcription regulator activity	0.183261590647643	bayes_pls_golite062009
protein binding	0.0755837372617499	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: