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View Structure Prediction Details

Protein: MSH3_ARATH
Organism: Arabidopsis thaliana
Length: 1081 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSH3_ARATH.

Description E-value Query
Range
Subject
Range
gi|7269404, gi|2... - gi|7269404|emb|CAB81364.1| putative DNA mismatch repair protein [Arabidopsis thaliana], pir||B85295 ...
820.0 [0..1] [1081..1]

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Predicted Domain #1
Region A:
Residues: [1-1081]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP  60
   61 KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS SRKYTPLEQQ VVELKSKYPD 120
  121 VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG 180
  181 VVKQTETAAI KSHGANRTGP FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV 240
  241 VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL 300
  301 LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE 360
  361 MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG FERILYQGAS FRSLSSNTEM 420
  421 TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD 480
  481 AVSEISACMG SHSSSQLSSE LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF 540
  541 HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV 600
  601 DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA 660
  661 IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY HPPEIVAGLD ELALATEHLA 720
  721 IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI 780
  781 NIQSGRHPVL ETILQDNFVP NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG 840
  841 SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR 900
  901 GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK 960
  961 GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR AISMAAKLEA EVRARERNTR1020
 1021 MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS1080
 1081 F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2o8bB
Description: No description for 2o8bB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle