YRC Public Data Repository - Protein Structure Prediction

Protein:	MINE_BUCAP
Organism:	Buchnera aphidicola (Schizaphis graminum)
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MINE_BUCAP.

Description	E-value	Query Range	Subject Range
gi\|88820533, gi\|... - gi\|88857336\|ref\|ZP_01131979.1\| cell division topological specificity factor [Pseudoalteromonas tunic...	132.0	[0..1]	[83..1]
MINE_PECAS - Cell division topological specificity factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC... MINE_ERWCT - Cell division topological specificity factor OS=Erwinia carotovora subsp. atroseptica GN=minE PE=3 S...	131.0	[0..1]	[83..1]
gi\|95109614 - gi\|95109614\|emb\|CAK14315.1\| cell division topological specificity factor MinE [Pseudomonas entomophi... MINE_PSEE4 - Cell division topological specificity factor OS=Pseudomonas entomophila (strain L48) GN=minE PE=3 SV...	131.0	[0..1]	[83..1]
MINE_HAHCH - Cell division topological specificity factor OS=Hahella chejuensis (strain KCTC 2396) GN=minE PE=3 S...	129.0	[0..1]	[83..1]
MINE_PSEHT - Cell division topological specificity factor OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=m...	129.0	[0..1]	[83..1]
tr\|I7B9M4\|I7B9M4... - Cell division topological specificity factor OS=Pseudomonas putida (strain DOT-T1E) GN=minE PE=3 SV=... MINE_PSEP1 - Cell division topological specificity factor OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=minE... MINE_PSEPK - Cell division topological specificity factor OS=Pseudomonas putida (strain KT2440) GN=minE PE=3 SV=1 tr\|E4REQ1\|E4REQ1... - Cell division topological specificity factor OS=Pseudomonas putida (strain BIRD-1) GN=minE PE=3 SV=1 MINE_PSEPG - Cell division topological specificity factor OS=Pseudomonas putida (strain GB-1) GN=minE PE=3 SV=1	129.0	[0..1]	[83..1]
gi\|49082426 - gi\|49082426\|gb\|AAT50613.1\| PA3245 [synthetic construct]	128.0	[0..1]	[83..1]
MINE_SHEDO - Cell division topological specificity factor OS=Shewanella denitrificans (strain OS217 / ATCC BAA-10...	128.0	[0..1]	[83..1]
MINE_PSEPF - Cell division topological specificity factor OS=Pseudomonas fluorescens (strain Pf0-1) GN=minE PE=3 ...	128.0	[0..1]	[83..1]
MINE_PHOLL - Cell division topological specificity factor OS=Photorhabdus luminescens subsp. laumondii (strain DS... MINE_PHOLL - Cell division topological specificity factor OS=Photorhabdus luminescens subsp. laumondii GN=minE PE...	128.0	[0..1]	[83..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLDFFLSR NKNTAHVAKE RLQIIVAEQR KFKSEPDYLP QLKREILSVI CKYVNIDPHM  60
   61 VTIQLEQKNE DISVLELNII LPD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.769551
Match:	PF03776.5
Description:	No description for PF03776.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.819	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits