YRC Public Data Repository - Protein Structure Prediction

Protein:	MGSA_LISIN
Organism:	Listeria innocua
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MGSA_LISIN.

Description	E-value	Query Range	Subject Range
CARB2_METJA, CAB... - Carbamoyl-phosphate synthase large chain, C-terminal section OS=Methanocaldococcus jannaschii GN=car... CARB2_METJA - Carbamoyl-phosphate synthase large chain, C-terminal section OS=Methanocaldococcus jannaschii (strai...	148.0	[0..2]	[134..483]
MGSA_CALBD - Methylglyoxal synthase OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=... MGSA_CALS8 - Methylglyoxal synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T ...	148.0	[0..1]	[129..1]
MGSA_GEOKA - Methylglyoxal synthase OS=Geobacillus kaustophilus (strain HTA426) GN=mgsA PE=3 SV=1 MGSA_GEOKA - Methylglyoxal synthase OS=Geobacillus kaustophilus GN=mgsA PE=3 SV=1	148.0	[0..1]	[133..1]
gi\|87125678, gi\|... - gi\|87125678\|ref\|ZP_01081522.1\| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. RS9917...	146.0	[0..2]	[134..974]
gi\|113953489, gi... - gi\|113953489\|ref\|YP_730413.1\| carbamoyl phosphate synthase large subunit [Synechococcus sp. CC9311],...	145.0	[0..2]	[134..974]
gi\|68191704, gi\|... - gi\|69276805\|ref\|ZP_00612277.1\| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Mes...	145.0	[0..2]	[133..1035]
gi\|68177767, gi\|... - gi\|95929151\|ref\|ZP_01311895.1\| carbamoyl-phosphate synthase, large subunit [Desulfuromonas acetoxida...	145.0	[0..2]	[134..955]
gi\|82944642, gi\|... - gi\|83309801\|ref\|YP_420065.1\| carbamoyl phosphate synthase large subunit [Magnetospirillum magneticum...	144.0	[0..3]	[133..954]
gi\|23013681 - gi\|23013681\|ref\|ZP_00053549.1\| COG0458: Carbamoylphosphate synthase large subunit (split gene in MJ)...	144.0	[0..3]	[133..954]
gi\|148263921, gi... - gi\|88936069\|ref\|ZP_01141688.1\| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Geo...	144.0	[0..2]	[134..954]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIALIAHDE KKDLMVGFAT AYKHLLEPHQ LYATGTTGLR IIEATGLTVH RFKSGPLGGD  60
   61 QQIGARISEN KMDLVIFLRD PLTAQPHEPD VSALIRLCDV YEIPLATNIG TAEILIRGLG 120
  121 AGFLDWRDLR RNDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.154902
Match:	1b93A
Description:	Methylglyoxal synthase, MgsA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylglyoxal synthase activity	7.67158041469211	bayes_pls_golite062009
catalytic activity	2.05174935916901	bayes_pls_golite062009
carbon-oxygen lyase activity	0.8193600732138	bayes_pls_golite062009
carbon-oxygen lyase activity, acting on phosphates	0.74427062677768	bayes_pls_golite062009
lyase activity	0.129701662862796	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: