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View Structure Prediction Details

Protein: MDAR2_ARATH
Organism: Arabidopsis thaliana
Length: 435 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDAR2_ARATH.

Description E-value Query
Range
Subject
Range
gi|71062053, gi|... - gi|71082940|ref|YP_265659.1| dihydrolipoyl dehydrogenase [Candidatus Pelagibacter ubique HTCC1062], ...
317.0 [0..1] [433..1]

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Predicted Domain #1
Region A:
Residues: [1-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEKSFKYV IVGGGVAAGY AAREFFNQGV KPGELAIISR EQVPPYERPA LSKGYIHLEN  60
   61 KATLPNFYVA AGIGGERQFP QWYKEKGIEL ILGTEIVKAD LAAKTLVSGT GQVFKYQTLL 120
  121 AATGSSVIRL SDFGVPGADA KNIFYLRELE DADYLAYAME TKEKGKAVVV GGGYIGLELG 180
  181 AALKANNLDV TMVYPEPWCM PRLFTAGIAS FYEGYYANKG INIVKGTVAS GFTTNSNGEV 240
  241 TEVKLKDGRT LEADIVIVGV GGRPIISLFK DQVEEEKGGL KTDGFFKTSL PDVYAIGDVA 300
  301 TFPMKLYNEM RRVEHVDHAR KSAEQAVKAI KAAEEGNSIP EYDYLPYFYS RAFDLSWQFY 360
  361 GDNVGESVLF GDNDPESPKP KFGSYWIKER KVVGAFLEGG SPEENNAIAK LARAQPSVES 420
  421 LEVLSKEGLS FATNI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.69897
Match: 1q1rA
Description: Crystal Structure of Putidaredoxin Reductase from Pseudomonas putida
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on NADH or NADPH 4.32669900343685 bayes_pls_golite062009
oxidoreductase activity 3.69067315875275 bayes_pls_golite062009
catalytic activity 2.72883626464817 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 2.01097953319687 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 1.81765036027149 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 1.66535683920169 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle