YRC Public Data Repository - Protein Structure Prediction

Protein:	MARA_ECOLI
Organism:	Escherichia coli
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MARA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|46118176, gi\|... - gi\|67925376\|ref\|ZP_00518726.1\| Helix-turn-helix, AraC type [Crocosphaera watsonii WH 8501], gi\|67852...	134.0	[0..1]	[110..156]
gi\|56421743, gi\|... - gi\|56421743\|ref\|YP_149061.1\| two-component response regulator [Geobacillus kaustophilus HTA426], gi\|...	133.0	[0..5]	[116..402]
gi\|56965291, gi\|... - gi\|56965291\|ref\|YP_177023.1\| AraC/XylS family transcriptional regulator [Bacillus clausii KSM-K16], ...	131.0	[0..5]	[117..22]
gi\|29347782, gi\|... - gi\|29347782\|ref\|NP_811285.1\| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482], gi\|2...	130.0	[0..1]	[115..1]
gi\|228655231, gi... - gi\|229128372\|ref\|ZP_04257353.1\| AraC-family transcriptional regulator [Bacillus cereus BDRD-Cer4], g... gi\|29896701, gi\|... - gi\|30021148\|ref\|NP_832779.1\| AraC family transcriptional regulator [Bacillus cereus ATCC 14579], gi\|...	129.0	[0..2]	[116..3]
gi\|110833693, gi... - gi\|110833693\|ref\|YP_692552.1\| AraC family transcriptional regulator [Alcanivorax borkumensis SK2], g...	129.0	[0..3]	[118..212]
gi\|83643766, gi\|... - gi\|83643766\|ref\|YP_432201.1\| transcriptional regulator [Hahella chejuensis KCTC 2396], gi\|83631809\|g...	129.0	[0..4]	[118..218]
gi\|145411082, gi... - gi\|82499103\|ref\|ZP_00884554.1\| Helix-turn-helix, AraC type:Response regulator receiver [Caldicellulo...	128.0	[0..9]	[111..410]
gi\|25531613 - pir\|\|AD2202 transcription regulator all3171 [imported] - Nostoc sp. (strain PCC 7120) gi\|17230663, gi\|... - gi\|17230663\|ref\|NP_487211.1\| transcriptional regulator [Nostoc sp. PCC 7120], gi\|17132266\|dbj\|BAB748...	128.0	[0..4]	[114..195]
gi\|51975219, gi\|... - gi\|52141750\|ref\|YP_085079.1\| AraC family transcriptional regulator [Bacillus cereus E33L], gi\|519752...	127.0	[0..5]	[113..77]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMSRRNTDA ITIHSILDWI EDNLESPLSL EKVSERSGYS KWHLQRMFKK ETGHSLGQYI  60
   61 RSRKMTEIAQ KLKESNEPIL YLAERYGFES QQTLTRTFKN YFDVPPHKYR MTNMQGESRF 120
  121 LHPLNHYNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.154902
Match:	1bl0A
Description:	MarA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.334577365229545	bayes_pls_golite062009
transcription regulator activity	0.0696342306231097	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: