YRC Public Data Repository - Protein Structure Prediction

Protein:	ANP1_ARATH
Organism:	Arabidopsis thaliana
Length:	666 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ANP1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|2342421 - gi\|2342421\|dbj\|BAA21854.1\| NPK1-related protein kinase 1L [Arabidopsis thaliana]	462.0	[0..6]	[666..1]
gi\|114654975 - gi\|114654975\|ref\|XP_001137919.1\| PREDICTED: MAP/microtubule affinity-regulating kinase 3 isoform 7 [...	358.0	[0..7]	[664..2]
gi\|119602218, gi... - gi\|15042609\|gb\|AAK82367.1\|AF387637_1 Ser/Thr protein kinase PAR-1A [Homo sapiens], gi\|119602218\|gb\|E...	358.0	[0..7]	[664..2]
gi\|73964121 - gi\|73964121\|ref\|XP_868655.1\| PREDICTED: similar to MAP/microtubule affinity-regulating kinase 3 isof...	357.0	[0..7]	[664..2]
gi\|117616782 - gi\|117616782\|gb\|ABK42409.1\| Mark3 [synthetic construct] gi\|74205503, gi\|... - gi\|74205503\|dbj\|BAE21056.1\| unnamed protein product [Mus musculus], gi\|251823810\|ref\|NP_067491.2\| MA...	354.0	[0..7]	[664..2]

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Predicted Domain #1

Region A:
Residues: [1-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDFFGSVRR SLVFRPSSDD DNQENQPPFP GVLADKITSC IRKSKIFIKP SFSPPPPANT  60
   61 VDMAPPISWR KGQLIGRGAF GTVYMGMNLD SGELLAVKQV LIAANFASKE KTQAHIQELE 120
  121 EEVKLLKNLS HPNIVRYLGT VREDDTLNIL LEFVPGGSIS SLLEKFGPFP ESVVRTYTRQ 180
  181 LLLGLEYLHN HAIMHRDIKG ANILVDNKGC IKLADFGASK QVAELATMTG AKSMKGTPYW 240
  241 MAPEVILQTG HSFSADIWSV GCTVIEMVTG KAPWSQQYKE VAAIFFIGTT KSHPPIPDTL 300
  301 SSDAKDFLLK CLQEVPNLRP TASELLKHPF VMGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	2clqA
Description:	No description for 2clqA was found.

Predicted Domain #2

Region A:
Residues: [335-429]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKESASTDLG SVLNNLSTPL PLQINNTKST PDSTCDDVGD MCNFGSLNYS LVDPVKSIQN  60
   61 KNLWQQNDNG GDEDDMCLID DENFLTFDGE MSSTL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [430-559]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKDCHLKKSC DDISDMSIAL KSKFDESPGN GEKESTMSME CDQPSYSEDD DELTESKIKA  60
   61 FLDEKAADLK KLQTPLYEEF YNSLITFSPS CMESNLSNSK REDTARGFLK LPPKSRSPSR 120
  121 GPLGGSPSRA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [560-666]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDATSCSKSP GSGGSRELNI NNGGDEASQD GVSARVTDWR GLVVDTKQEL SQCVALSEIE  60
   61 KKWKEELDQE LERKRQEIMR QAGLGSSPRD RGMSRQREKS RFASPGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits