YRC Public Data Repository - Protein Structure Prediction

Protein:	INSJ_ECOLI
Organism:	Escherichia coli
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INSJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238893142, gi... - gi\|238897001\|ref\|YP_002921746.1\| hypothetical protein KP1_5246 [Klebsiella pneumoniae NTUH-K2044], g... gi\|13517945 - gi\|13517945\|gb\|AAK29065.1\|AF345899_1 OrfA [Klebsiella pneumoniae] gi\|150957846, gi... - gi\|152972997\|ref\|YP_001338143.1\| hypothetical protein KPN_04521 [Klebsiella pneumoniae subsp. pneumo...	120.0	[0..1]	[172..1]
gi\|25503457 - pir\|\|F95912 hypothetical protein SMb20826 [imported] - Sinorhizobium meliloti (strain 1021) magaplas... gi\|16264314, gi\|... - gi\|16264314\|ref\|NP_437106.1\| hypothetical protein SM_b20826 [Sinorhizobium meliloti 1021], gi\|151404...	116.0	[0..4]	[172..2]
gi\|229123098, gi... - gi\|229123098\|ref\|ZP_04252305.1\| Transposase [Bacillus cereus 95/8201], gi\|228660392\|gb\|EEL16025.1\| T... gi\|228928633, gi... - gi\|228928633\|ref\|ZP_04091669.1\| Transposase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA... gi\|49329835, gi\|... - gi\|49478279\|ref\|YP_037663.1\| transposase for IS150 [Bacillus thuringiensis serovar konkukian str. 97...	115.0	[0..5]	[173..3]
gi\|30020939, gi\|... - gi\|30020939\|ref\|NP_832570.1\| transposase [Bacillus cereus ATCC 14579], gi\|29896492\|gb\|AAP09771.1\| Tr... gi\|228655435, gi... - gi\|229128160\|ref\|ZP_04257142.1\| Transposase [Bacillus cereus BDRD-Cer4], gi\|228655435\|gb\|EEL11291.1\|... gi\|206973746, gi... - gi\|206977553\|ref\|ZP_03238447.1\| transposase [Bacillus cereus H3081.97], gi\|206976985\|ref\|ZP_03237886... gi\|229199888, gi... - gi\|229199888\|ref\|ZP_04326474.1\| Transposase [Bacillus cereus m1293], gi\|228583589\|gb\|EEK41821.1\| Tra...	114.0	[0..5]	[173..3]
gi\|228834582, gi... - gi\|228925077\|ref\|ZP_04088202.1\| Transposase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]... gi\|218541357, gi... - gi\|218896651\|ref\|YP_002445062.1\| transposase [Bacillus cereus G9842], gi\|218541357\|gb\|ACK93751.1\| tr... gi\|67078176, gi\|... - gi\|67078176\|ref\|YP_245796.1\| transposase, orfA ISRSO11-related [Bacillus cereus E33L], gi\|66970482\|g... gi\|228930894, gi... - gi\|228930894\|ref\|ZP_04093864.1\| Transposase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA...	114.0	[0..5]	[173..3]
gi\|47564686, gi\|... - gi\|47564686\|ref\|ZP_00235730.1\| ISPsy9, transposase OrfA, putative [Bacillus cereus G9241], gi\|475580...	114.0	[0..5]	[173..3]
gi\|74493213, gi\|... - gi\|75759320\|ref\|ZP_00739418.1\| Transposase [Bacillus thuringiensis serovar israelensis ATCC 35646], ...	113.0	[0..4]	[173..2]
gi\|93354357, gi\|... - gi\|94310505\|ref\|YP_583715.1\| ISRSO11-transposase orfA protein [Ralstonia metallidurans CH34], gi\|933...	112.0	[0..5]	[168..3]
gi\|194436096, gi... - gi\|83588257\|ref\|ZP_00926882.1\| COG2963: Transposase and inactivated derivatives [Escherichia coli 10... gi\|251785847, gi... - gi\|251785847\|ref\|YP_003000151.1\| hypothetical protein B21_02376 [Escherichia coli BL21], gi\|24237812... gi\|254162283, gi... - gi\|254162283\|ref\|YP_003045391.1\| probably ISRSO11-transposase orfA protein [Escherichia coli B str. ... gi\|253978351, gi... - gi\|254289044\|ref\|YP_003054792.1\| probable ISRSO11-transposase OrfA protein [Escherichia coli BL21(DE...	112.0	[0..4]	[171..2]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKPKYPFEK RLEVVNHYFT TDDGYRIISA RFGVPRTQVR TWVALYEKHG EKGLIPKPKG  60
   61 VSADPELRIK VVKAVIEQHM SLNQAAAHFM LAGSGSVARW LKVYEER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.522879
Match:	2jn6A
Description:	No description for 2jn6A was found.

Predicted functions:

Term	Confidence	Notes
binding	0.334577365229545	bayes_pls_golite062009
transcription regulator activity	0.0696342306231097	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [108-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEAGLRALKI GTKRNIAISV DPEKAASALE LSKDRRIEDL ERQVRFLETR LMYLKKLKAL  60
   61 AHPTKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: