YRC Public Data Repository - Protein Structure Prediction

Protein:	IL5_MERUN
Organism:	Meriones unguiculatus
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IL5_MERUN.

Description	E-value	Query Range	Subject Range
IL5_HORSE - Interleukin-5 OS=Equus caballus GN=IL5 PE=2 SV=1	245.0	[0..1]	[132..1]
gi\|197216041, gi... - gi\|197216041\|gb\|ACH53244.1\| interleukin 5 [Bos gaurus], gi\|197216039\|gb\|ACH53243.1\| interleukin 5 [B... gi\|197215997, gi... - gi\|197215997\|gb\|ACH53222.1\| interleukin 5 [Ovis aries], gi\|197215995\|gb\|ACH53221.1\| interleukin 5 [O... gi\|197215971, gi... - gi\|197215973\|gb\|ACH53210.1\| interleukin 5 [Capra hircus], gi\|197215971\|gb\|ACH53209.1\| interleukin 5 ... gi\|197216085, gi... - gi\|197216133\|gb\|ACH53290.1\| interleukin 5 [Bos indicus], gi\|197216131\|gb\|ACH53289.1\| interleukin 5 [... IL5_BOVIN - Interleukin-5 OS=Bos taurus GN=IL5 PE=2 SV=1 gi\|197216063, gi... - gi\|197216065\|gb\|ACH53256.1\| interleukin 5 [Bison bison], gi\|197216063\|gb\|ACH53255.1\| interleukin 5 [...	235.0	[0..1]	[131..1]
IL5_SHEEP - Interleukin-5 OS=Ovis aries GN=IL5 PE=2 SV=1	233.0	[0..1]	[131..1]
IL5_MOUSE - Interleukin-5 OS=Mus musculus GN=Il5 PE=1 SV=1	228.0	[0..2]	[132..3]
gi\|3342392 - gi\|3342392\|gb\|AAC27616.1\| interleukin 5 [Felis catus]	227.0	[0..14]	[132..16]
IL5_RAT - Interleukin-5 OS=Rattus norvegicus GN=Il5 PE=3 SV=1 gi\|313255 - gi\|313255\|emb\|CAA38283.1\| interleukin 5 [Rattus rattus]	227.0	[0..1]	[131..1]
IL5_SIGHI - Interleukin-5 OS=Sigmodon hispidus GN=IL5 PE=2 SV=1	226.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPLQLSIL TLAWVWAVAL EIPMSAVVKE TLIQLSTHRA LLTSNETVRL PVPTHKNHQL  60
   61 CIGEIFQGLD ILKNQTARGG AVETLFQNLS LIKKYIDRQK EKCGEERRRA RQFLDYLQEF 120
  121 LGVMSTEWTM EG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.045757
Match:	1hulA
Description:	Interleukin-5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits