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View Structure Prediction Details

Protein: SO1204
Organism: Shewanella oneidensis
Length: 885 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO1204.

Description E-value Query
Range		 Subject
Range
IF2_SHESR - Translation initiation factor IF-2 OS=Shewanella sp. (strain MR-7) GN=infB PE=3 SV=1
IF2_SHESM - Translation initiation factor IF-2 OS=Shewanella sp. (strain MR-4) GN=infB PE=3 SV=1
 566.0 [0..1] [885..1]
IF2_KLEOX - Translation initiation factor IF-2 OS=Klebsiella oxytoca GN=infB PE=3 SV=1
 560.0 [0..1] [885..1]
IF2_ENTCL - Translation initiation factor IF-2 OS=Enterobacter cloacae GN=infB PE=3 SV=1
 557.0 [0..1] [885..1]
gi|124507644, gi... - gi|124549938|ref|ZP_01707897.1| translation initiation factor IF-2 [Shewanella putrefaciens 200], gi...
IF2_SHESW - Translation initiation factor IF-2 OS=Shewanella sp. (strain W3-18-1) GN=infB PE=3 SV=1
IF2_SHEPC - Translation initiation factor IF-2 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=infB ...
 556.0 [0..1] [885..1]
IF2_SHEFN - Translation initiation factor IF-2 OS=Shewanella frigidimarina (strain NCIMB 400) GN=infB PE=3 SV=1
 549.0 [0..1] [885..1]
IF2_SHEB8 - Translation initiation factor IF-2 OS=Shewanella baltica (strain OS185) GN=infB PE=3 SV=1
IF2_SHEB2 - Translation initiation factor IF-2 OS=Shewanella baltica (strain OS223) GN=infB PE=3 SV=1
IF2_SHEB9 - Translation initiation factor IF-2 OS=Shewanella baltica (strain OS195) GN=infB PE=3 SV=1
IF2_SHEB5 - Translation initiation factor IF-2 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=infB PE=3...
 547.0 [0..1] [885..1]
IF2_SHEAM - Translation initiation factor IF-2 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=infB P...
 540.0 [0..1] [885..1]
IF2_SHEDO - Translation initiation factor IF-2 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 1...
 540.0 [0..1] [885..1]
IF2_SALCH - Translation initiation factor IF-2 OS=Salmonella choleraesuis GN=infB PE=3 SV=1
IF2_SALCH - Translation initiation factor IF-2 OS=Salmonella choleraesuis (strain SC-B67) GN=infB PE=3 SV=1
IF2_SALCH - Translation initiation factor IF-2 OS=Salmonella choleraesuis GN=infB PE=3 SV=1
 540.0 [0..1] [885..1]
gi|3859102 - gi|3859102|emb|CAA05549.1| initiation factor IF2-alpha [Salmonella typhimurium]
gi|3859102|emb|C... - initiation factor IF2-alpha [Salmonella typhimurium]
 539.0 [0..1] [885..1]

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Predicted Domain #1
Region A:
Residues: [1-243] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTTVEKLA TEVGKSVERL IEQFSQAGIK KGQADNVSEA EKQQLLDYLK KQHGGDNAPT  60
   61 KMTLQRKTVS TLSVAGNGGQ SKDVKVEVRK TRTFVKRDVS DAVLKAEEEA KAKAEAEAKA 120
  121 KAETEAKAKA EAEAKAKVEA EAKAKAEAEA KAKAKAAAEV KVTKDTSPEA EAARIEAERL 180
  181 KAAQEAATKR KQAEEAAKAA EKARLLAEEN SKRWAEEERQ RLEAERYSDH HITTSKVARA 240
  241 AED

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.45
Match: 1miuA
Description: BRCA2 helical domain; BRCA2 tower domain; OB-fold domains of BRCA2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [244-379] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSDMDEEKRG RRARNKNTAK TKRGGKDARD GREKHMRNRS TAPESMAHGF NKPVAAVNRD  60
   61 VRIGETVTVA ELAHLMAVKA TEIIKQMMKM GSMVTINQVL DQETAQLVAE EMGHKVVLIR 120
  121 ENELEQQVLS ERDEEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 2e87A
Description: No description for 2e87A was found.

Predicted Domain #3
Region A:
Residues: [380-885] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVKLEPRAPV VTIMGHVDHG KTSLLDYIRR AKVAAGEAGG ITQHIGAYHV ETENGMITFL  60
   61 DTPGHAAFTA MRARGAKATD IVVLVVAADD GVMPQTIEAI QHAKAGNVPL IVAVNKMDKP 120
  121 EADIDRVKSE LSQHGVMSED WGGDNMFAFV SAKTGAGVDD LLEGILLQAE VLELKAVRDG 180
  181 MAAGVVIESQ LDKGRGPVAT ILVQEGTLRQ GDIVLCGLEY GKIRAMKDEN GRSITEAGPS 240
  241 IPVEILGLSG VPSAGDEATV VRDERKAREV ALYRQGKFRD VKLARQQKSK LENMFANMTE 300
  301 GEVKELNIVL KADVQGSLEA ITDSLMGLST DEVKVNIIAR GVGALTETDA TLAAASNAIM 360
  361 VGFNVRADAQ ARKTIENESV DLRYYSVIYN LIDEVKAAMT GMLSPEFKQQ IIGLAEVRDV 420
  421 FKSPKLGAIA GCMVTEGTIK RSAPIRVLRD NVVIFEGELE SLRRFKDDVN EVRNGMECGI 480
  481 GVKNYNDVRV GDQIEVFETV EVARTL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 114.0
Match: 1zo1I
Description: IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle