YRC Public Data Repository - Protein Structure Prediction

Protein:	HEPC2_MOUSE
Organism:	Mus musculus
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HEPC2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|192281975 - gi\|192281975\|emb\|CAO00820.1\| hepcidin [Larimichthys crocea] gi\|83416593 - gi\|83416593\|gb\|ABC18307.1\| hepcidin [Pseudosciaena crocea]	115.0	[0..1]	[82..1]
gi\|62638172, gi\|... - gi\|62638172\|gb\|AAX92671.1\| hepcidin precursor [Scophthalmus maximus], gi\|62638170\|gb\|AAX92670.1\| hep...	109.0	[0..1]	[82..1]
HAMP - hepcidin antimicrobial peptide	103.0	[0..1]	[82..1]
HEPC_PONAB - Hepcidin OS=Pongo abelii GN=HAMP PE=3 SV=1 HEPC_PONPY - Hepcidin precursor - Pongo pygmaeus (Orangutan)	103.0	[0..1]	[82..1]
gi\|156530229, gi... - gi\|157841284\|ref\|NP_001103163.1\| hepcidin antimicrobial peptide [Pan troglodytes], gi\|156530229\|gb\|A...	103.0	[0..1]	[82..1]
gi\|73765580 - gi\|73765580\|gb\|AAZ85124.1\| hepcidin precursor [Dicentrarchus labrax] HEPC_MORCS - Hepcidin OS=Morone chrysops x Morone saxatilis GN=hamp PE=1 SV=1 gi\|20799324, gi\|... - gi\|20799326\|gb\|AAM28440.1\|AF394246_1 hepcidin precursor [Morone chrysops], gi\|20799324\|gb\|AAM28439.1...	103.0	[0..1]	[82..1]
gi\|54660716, gi\|... - gi\|71841551\|gb\|AAZ43072.1\| hepcidin precursor [Paralichthys olivaceus], gi\|54660716\|gb\|AAV37453.1\| h...	101.0	[0..1]	[82..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSTRTQAA CLLLLLLASL SSTTYLQQQM RQTTELQPLH GEESRADIAI PMQKRRKRDI  60
   61 NFPICRFCCQ CCNKPSCGIC CEE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.309804
Match:	PF06446.3
Description:	No description for PF06446.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits