YRC Public Data Repository - Protein Structure Prediction

Protein:	HOFC_ECOLI
Organism:	Escherichia coli
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOFC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|94805, gi\|151066 - pir\|\|B35384 pilC protein - Pseudomonas aeruginosa, gi\|151066\|gb\|AAA25733.1\| pilin biogenesis protei...	396.0	[0..3]	[397..7]
gi\|68213835, gi\|... - gi\|91776494\|ref\|YP_546250.1\| type II secretion system protein [Methylobacillus flagellatus KT], gi\|9...	391.0	[0..6]	[396..10]
gi\|77461042, gi\|... - gi\|77461042\|ref\|YP_350549.1\| type II secretion system protein [Pseudomonas fluorescens Pf0-1], gi\|77...	386.0	[0..2]	[396..6]
gi\|94265745, gi\|... - gi\|94265745\|ref\|ZP_01289481.1\| type II secretion system protein [delta proteobacterium MLMS-1], gi\|9...	386.0	[0..4]	[397..1]
gi\|34499282, gi\|... - gi\|34499282\|ref\|NP_903497.1\| fimbrial assembly transmembrane protein [Chromobacterium violaceum ATCC...	386.0	[0..6]	[397..14]
gi\|71734826, gi\|... - gi\|71734826\|ref\|YP_273101.1\| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. phaseol...	385.0	[0..3]	[396..7]
gi\|88701939, gi\|... - gi\|88704112\|ref\|ZP_01101827.1\| general secretory pathway protein F [gamma proteobacterium KT 71], gi...	384.0	[0..1]	[396..1]
gi\|66044052, gi\|... - gi\|66044052\|ref\|YP_233893.1\| type II secretion system protein [Pseudomonas syringae pv. syringae B72...	383.0	[0..2]	[396..6]
gi\|110334300, gi... - gi\|121593228\|ref\|YP_985124.1\| type II secretion system protein [Acidovorax sp. JS42], gi\|120605308\|g...	383.0	[0..6]	[396..13]
gi\|28868145, gi\|... - gi\|28868145\|ref\|NP_790764.1\| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. tomato ... tr\|Q888U1\|Q888U1... - Type IV pilus biogenesis protein PilC OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pilC PE=...	383.0	[0..3]	[396..7]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKQLWRWH GITGDGNAQD GMLWAESRTL LLMALQQQMV TPLSLKRIAI NSAQWRGDKS  60
   61 AEVIHQLATL LKAGLTLSEG LALLAEQHPS KQWQALLQSL AHDLEQGIAF SNALLPWSEV 120
  121 FPPLYQAMIR TGELTGKLDE CCFELARQQK AQRQLTDKVK SALRYPIIIL AMAIMVVVAM 180
  181 LHFVLPEFAA IYKTFNTP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	18.431798
Match:	PF00482.14
Description:	No description for PF00482.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [199-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPALTQGIMT LADFSGEWSW LLVLFGFLLA IANKLLMRRP TWLIVRQKLL LRIPIMGSLM  60
   61 RGQKLTQIFT ILALTQSAGI TFLQGVESVR ETMRCPYWVQ LLTQIQHDIS NGQPIWLALK 120
  121 NTGEFSPLCL QLVRTGEASG SLDLMLDNLA HHHRENTMAL ADNLAALLEP ALLIITGGII 180
  181 GTLVVAMYLP IFHLGDAMSG MG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.30103
Match:	PF00482.14
Description:	No description for PF00482.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits