YRC Public Data Repository - Protein Structure Prediction

Protein:	HIS6_RALSO
Organism:	Ralstonia solanacearum
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIS6_RALSO.

Description	E-value	Query Range	Subject Range
HIS6_ALCBS - Imidazole glycerol phosphate synthase subunit HisF OS=Alcanivorax borkumensis (strain ATCC 700651 / ...	232.0	[0..2]	[256..3]
HIS6_CUPMC - Imidazole glycerol phosphate synthase subunit HisF OS=Cupriavidus metallidurans (strain ATCC 43123 /...	232.0	[0..1]	[256..1]
HIS6_GEODF - Imidazole glycerol phosphate synthase subunit HisF OS=Geobacter daltonii (strain DSM 22248 / JCM 158...	231.0	[0..1]	[256..1]
HIS6_GEOUR - Imidazole glycerol phosphate synthase subunit HisF OS=Geobacter uraniireducens (strain Rf4) GN=hisF ...	231.0	[0..1]	[256..1]
HIS6_CUPPJ - Imidazole glycerol phosphate synthase subunit HisF OS=Cupriavidus pinatubonensis (strain JMP 134 / L...	229.0	[0..1]	[256..1]
HIS6_SACD2 - Imidazole glycerol phosphate synthase subunit HisF OS=Saccharophagus degradans (strain 2-40 / ATCC 4...	229.0	[0..2]	[256..3]
gi\|94499843, gi\|... - gi\|94499843\|ref\|ZP_01306379.1\| Imidazoleglycerol-phosphate synthase [Oceanobacter sp. RED65], gi\|944...	228.0	[0..2]	[256..3]
HIS6_THETN - Imidazole glycerol phosphate synthase subunit hisF OS=Thermoanaerobacter tengcongensis GN=hisF PE=3 ... HIS6_CALS4 - Imidazole glycerol phosphate synthase subunit HisF OS=Caldanaerobacter subterraneus subsp. tengconge...	228.0	[0..1]	[256..1]
HIS6_CUPNH - Imidazole glycerol phosphate synthase subunit HisF OS=Cupriavidus necator (strain ATCC 17699 / H16 /...	228.0	[0..1]	[256..1]
HIS6_PELTS - Imidazole glycerol phosphate synthase subunit HisF OS=Pelotomaculum thermopropionicum (strain DSM 13...	228.0	[0..1]	[256..1]

Back

Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAKRIIPCL DVTNGRVVKG VNFVELRDAG DPVEIARRYD EQGADEITFL DITATSDGRD  60
   61 LILHIIEAVA SQVFIPLTVG GGVRALEDVR RLLNAGADKI SMNSSAVANP QLVSDASARH 120
  121 GAQCIVVAID AKKVSADGEP PRWEVFTHGG RKATGLDAVA WAREMARRGA GEILLTSMDR 180
  181 DGTKSGFDLE LTRAVSDAVP VPVIASGGVG NLQHLADGIK LGHADAVLAA SIFHYGEHTV 240
  241 GEAKRFMAQQ DIPVRM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.221849
Match:	1ka9F
Description:	Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
imidazoleglycerol-phosphate synthase activity	8.63799159510181	bayes_pls_golite062009
catalytic activity	2.44231061702877	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	1.13340776845419	bayes_pls_golite062009
indole-3-glycerol-phosphate synthase activity	0.549444136526559	bayes_pls_golite062009
tryptophan synthase activity	0.426391242491024	bayes_pls_golite062009
lyase activity	0.258652421339738	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: