YRC Public Data Repository - Protein Structure Prediction

Protein:	GSPK_ECOLI
Organism:	Escherichia coli
Length:	327 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSPK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82495888, gi\|... - gi\|82495888\|ref\|ZP_00881461.1\| general secretion pathway protein K [Shewanella sp. MR-4], gi\|8240619...	331.0	[0..2]	[325..6]
gi\|78506861, gi\|... - gi\|78685483\|ref\|ZP_00850261.1\| general secretion pathway protein K [Shewanella sp. ANA-3], gi\|785068...	330.0	[0..2]	[325..6]
gi\|78511550, gi\|... - gi\|78689150\|ref\|ZP_00853815.1\| general secretion pathway protein K [Shewanella sp. MR-7], gi\|7851155...	328.0	[0..2]	[325..6]
gi\|24345566, gi\|... - gi\|24371773\|ref\|NP_715815.1\| general secretion pathway protein K [Shewanella oneidensis MR-1], gi\|24... SO0173 - general secretion pathway protein K	327.0	[0..2]	[325..6]
gi\|113947901, gi... - gi\|160873286\|ref\|YP_001552602.1\| general secretion pathway protein K [Shewanella baltica OS195], gi\|...	326.0	[0..2]	[325..6]
gi\|146866288, gi... - gi\|217971373\|ref\|YP_002356124.1\| General secretion pathway protein K [Shewanella baltica OS223], gi\|... gi\|68541297, gi\|... - gi\|68541297\|ref\|ZP_00581042.1\| General secretion pathway protein K [Shewanella baltica OS155], gi\|68...	325.0	[0..2]	[325..6]
gi\|28805122, gi\|... - gi\|28896914\|ref\|NP_796519.1\| general secretion pathway protein K [Vibrio parahaemolyticus RIMD 22106... gi\|28805122 - gi\|28805122\|dbj\|BAC58403.1\| general secretion pathway protein K [Vibrio parahaemolyticus RIMD 221063...	324.0	[0..1]	[326..1]
gi\|91190222, gi\|... - gi\|91224976\|ref\|ZP_01260235.1\| general secretion pathway protein K [Vibrio alginolyticus 12G01], gi\|...	318.0	[0..1]	[326..1]
gi\|68517296, gi\|... - gi\|68545428\|ref\|ZP_00584979.1\| General secretion pathway protein K [Shewanella amazonensis SB2B], gi...	316.0	[0..2]	[325..1]
gi\|78361898, gi\|... - gi\|78365997\|ref\|ZP_00836280.1\| General secretion pathway protein K [Shewanella sp. PV-4], gi\|7836189...	314.0	[0..1]	[325..14]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNEQRGVAL LIVLMLLALM AALAADMTLS FHSQLQRTRQ VNHHLQRQYD IELAEKLALA  60
   61 SLTQDVKDND RQTTLQQYW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [80-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQPQQLQLED GNTVKWQLRD AQHCFNLNAL AKISDDPLAS PDFPAQVFSA LLINAGIDRG  60
   61 NTDEIVQSIA DYIDVDDSPR FHGAEDSFYQ SQTPPRHSAN QMLFLTGELR QIKGITENIY 120
  121 QRLIPYVCVL PTTELSINLN MLTENDIPLF RALFLNNITD ADARVLLQKR PREGWLTTDA 180
  181 FLYWAQQDFS G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.045757
Match:	2hpiA
Description:	No description for 2hpiA was found.

Predicted Domain #3

Region A:
Residues: [271-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKPLVAQVKR HLFPYSRYFT LSTESISDEQ SQGWQSHIFF NRKQQSAQIY RRTLQLY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits