YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|151943189
Organism:	Saccharomyces cerevisiae YJM789
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|151943189.

Description	E-value	Query Range	Subject Range
DAL2 - Allantoicase, converts allantoate to urea and ureidoglycolate in the second step of allantoin degrad... gi\|151943189 - gi\|151943189\|gb\|EDN61524.1\| allantoicase [Saccharomyces cerevisiae YJM789] ALLC_YEAST - Allantoicase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAL2 PE=1 SV=1	0.0	[1..343]	[1..343]
ALLC_NEUCR - Allantoicase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987... ALC_NEUCR, ALLC_... - Allantoicase OS=Neurospora crassa GN=alc-1 PE=2 SV=2, (P18407) Allantoicase (EC 3.5.3.4)	0.0	[19..341]	[26..349]
SPAC1F7.09c - allantoicase ALLC_SCHPO - Probable allantoicase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F7.09c PE=3 SV=...	0.0	[21..342]	[21..337]
ALLC_MOUSE - Probable allantoicase OS=Mus musculus GN=Allc PE=2 SV=1	0.0	[17..343]	[14..386]
ALLC_RALSO - Probable allantoicase OS=Ralstonia solanacearum GN=alc PE=3 SV=1 ALLC_RALSO - Probable allantoicase OS=Ralstonia solanacearum (strain GMI1000) GN=alc PE=3 SV=1	0.0	[24..342]	[19..333]
ALLC_XENLA - Allantoicase OS=Xenopus laevis GN=allc PE=2 SV=1	0.0	[24..343]	[21..384]
ALLC_RHIME - Probable allantoicase OS=Rhizobium meliloti GN=alc PE=3 SV=1 ALLC_RHIME - Probable allantoicase OS=Rhizobium meliloti (strain 1021) GN=alc PE=3 SV=1	0.0	[22..342]	[15..332]
ALLC_PSEAE - Probable allantoicase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228... ALLC_PSEAE - Probable allantoicase OS=Pseudomonas aeruginosa GN=alc PE=3 SV=1	0.0	[18..342]	[7..327]
ALLC_STRCO - Probable allantoicase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=alc PE=3 SV... ALLC_STRCO, ALC_... - Probable allantoicase OS=Streptomyces coelicolor GN=alc PE=3 SV=1, (Q9RKU4) Putative allantoicase (E...	0.0	[10..342]	[26..357]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFFSLADEA EFKSIIISKN KAVDVIGSKL GGQVVSFSDE WFASAENLIQ PTAPIRDPTR  60
   61 FVHSGAWYDG WETRRHNEME YDWVIIKMGV AAAHIIGGEI DTAFFNGNHA PFVSIEALYD 120
  121 EGEEGNIVED DSRWVEIVEK FECGPSQRHL FVRGNGLTKE RFTHIKLKMY PDGGIARFRL 180
  181 YGRVV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	102.823909
Match:	PF03561
Description:	Allantoicase repeat

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
allantoicase activity	3.21785739891956	bayes_pls_golite062009
binding	1.56884951913654	bayes_pls_golite062009
nucleic acid binding	0.718803937693854	bayes_pls_golite062009
DNA binding	0.547507778308479	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [186-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPELKTKDHI IDLAYVCNGA VALKYSDQHF GSVDNLLLPG RGHDMSDGWE TKRSRQPGHT  60
   61 DWAVIQLGRE SSFIEKIIVD TAHFRGNFPQ FITVEGCLKE SESSENTGEG TWVELVGKSK 120
  121 TGPDKEHVYE IRKSIRVSHV KLTIIPDGGV KRIRVWGY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	87.180456
Match:	PF03561
Description:	Allantoicase repeat

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: