YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|151942298
Organism:	Saccharomyces cerevisiae YJM789
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|151942298.

Description	E-value	Query Range	Subject Range
RM35_YEAST - 54S ribosomal protein L35, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151942298 - gi\|151942298\|gb\|EDN60654.1\| YmL35 [Saccharomyces cerevisiae YJM789] MRPL35 - Mitochondrial ribosomal protein of the large subunit	0.0	[1..367]	[1..367]
gi\|220948718 - gi\|220948718\|gb\|ACL86902.1\| mRpL38-PA [synthetic construct] mRpL38-PA - The gene mitochondrial ribosomal protein L38 is referred to in FlyBase by the symbol Dmel\mRpL38 (CG...	8.0E-69	[52..364]	[38..330]
gi\|51859245 - gb\|AAH82198.1\| MGC98748 protein [Xenopus laevis] gi\|13195606, gi\|... - gi\|74195960\|dbj\|BAE30538.1\| unnamed protein product [Mus musculus], gi\|30851523\|gb\|AAH52494.1\| Mitoc...	1.0E-65	[58..366]	[41..312]
SPBC2F12.10 - mitochondrial ribosomal protein subunit L35 RM35_SCHPO - 60S ribosomal protein L35, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=S...	9.0E-58	[71..354]	[88..354]
OV16_ONCVO - OV-16 antigen OS=Onchocerca volvulus GN=OV16 PE=2 SV=2	5.0E-53	[145..345]	[23..197]
gi\|109098924, gi... - gi\|109098926\|ref\|XP_001084621.1\| PREDICTED: phosphatidylethanolamine binding protein 1 isoform 2 [Ma... PEBP1_MACFA - Phosphatidylethanolamine-binding protein 1 OS=Macaca fascicularis GN=PEBP1 PE=2 SV=2	2.0E-52	[171..354]	[18..184]
ENSPTRT00000010122 - null PEBP1 - phosphatidylethanolamine binding protein 1	6.0E-52	[171..354]	[18..184]
PEBP1_BOVIN - Phosphatidylethanolamine-binding protein 1 OS=Bos taurus GN=PEBP1 PE=1 SV=2	7.0E-52	[171..354]	[18..184]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRSIHTTK ILQKPNATSH IWSDFTTRPS SLSIQSSKVK NYLFQKKASL DPPSISRRSN  60
   61 RIKYSPPEHI DEIFRMSYDF LEQRSSKFYE LANKTKNPLK KDALLIKAEI NNPEVQYNFQ 120
  121 FNNKLNNVKD IIDYD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.281	a.29.2	Bromodomain
View	Download	0.203	a.1.1	Globin-like
View	Download	0.203	a.1.1	Globin-like
View	Download	0.592	a.7.8	GAT domain
View	Download	0.592	a.7.8	GAT domain
View	Download	0.281	a.29.2	Bromodomain
View	Download	0.270	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.270	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.234	a.7.8	GAT domain

Predicted Domain #2

Region A:
Residues: [136-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPVYRHLGKQ HWESYGQMLL MQRLETLAAI PDTLPTLVPR AEVNIKFPFS TGVNKWIEPG  60
   61 EFLSSNVTSM RPIFKIQEYE LVNVEKQLYT VLIVNPDVPD LSNDSFKTAL CYGLVNINLT 120
  121 YNDNLIDPRK FHSSNIIADY LPPVPEKNAG KQRFVVWVFR QPLIEDKQGP NMLEIDRKEL 180
  181 SRDDFDIRQF TKKYNLTAIG AHIWRSEWDA KVAAVREKYG LPPGRVFSRV RR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.228787
Match:	1kn3A_
Description:	Phosphatidylethanolamine binding protein, PEBP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits