YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|147897883, gi...
Organism:	synthetic construct
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|147897883, gi....

Description	E-value	Query Range	Subject Range
gi\|61368488, gi\|... - gi\|61368488\|gb\|AAX43188.1\| interleukin 9 [synthetic construct], gi\|60828297\|gb\|AAX36837.1\| interleuk...	246.0	[0..1]	[143..1]
gi\|61358387, gi\|... - gi\|61358387\|gb\|AAX41559.1\| interleukin 9 [synthetic construct], gi\|60816707\|gb\|AAX36393.1\| interleuk... IL9 - interleukin 9 HGNC:6029\|MIM:14... - 9	246.0	[0..1]	[143..1]
gi\|114601802 - gi\|114601802\|ref\|XP_001168618.1\| PREDICTED: similar to IL9 [Pan troglodytes]	244.0	[0..1]	[143..1]
gi\|33088187 - gi\|33088187\|gb\|AAP93197.1\| interleukin 9 [Sigmodon hispidus]	239.0	[0..1]	[141..1]
gi\|109078696 - gi\|109078696\|ref\|XP_001110897.1\| PREDICTED: similar to interleukin 9 precursor [Macaca mulatta]	227.0	[0..1]	[143..1]
gi\|109505449, gi... - gi\|109505449\|ref\|XP_001068265.1\| PREDICTED: similar to Interleukin-9 precursor (IL-9) (T-cell growth...	203.0	[0..38]	[143..113]
gi\|76671538 - gi\|76671538\|ref\|XP_869221.1\| PREDICTED: similar to IL9 [Bos taurus]	147.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVTYILASV LLFSSVLGQR CSTTWGIRDT NYLIENLKDD PPSKCSCSGN VTSCLCLSVP  60
   61 TDDCTTPCYR EGLLQLTNAT QKSRLLPVFH RVKRIVEVLK NITCPSFSCE KPCNQTMAGN 120
  121 TLSFLKSLLG TFQKTEMQRQ KSRP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.983
Match:	2oqpA
Description:	No description for 2oqpA was found.

Predicted functions:

Term	Confidence	Notes
protein binding	2.60305376462595	bayes_pls_golite062009
receptor binding	2.26671282715883	bayes_pls_golite062009
binding	1.90672124618713	bayes_pls_golite062009
cytokine receptor binding	1.57802988964689	bayes_pls_golite062009
growth factor activity	1.57198017031629	bayes_pls_golite062009
cytokine activity	1.1956964972314	bayes_pls_golite062009
catalytic activity	0.633695612490877	bayes_pls_golite062009
transcription regulator activity	0.303083890231395	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: