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View Structure Prediction Details

Protein: YQGF_STRPG
Organism: Streptococcus pyogenes str. Manfredo
Length: 139 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YQGF_STRPG.

Description E-value Query
Range
Subject
Range
gi|55739831, gi|... - gb|AAV63472.1| DNA recombination protein, putative [Streptococcus thermophilus CNRZ1066], gb|AAV615...
YQGF_STRT1 - Putative pre-16S rRNA nuclease OS=Streptococcus thermophilus (strain CNRZ 1066) GN=str1960 PE=3 SV=1
YQGF_STRT2 - Putative pre-16S rRNA nuclease OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=st...
191.0 [0..1] [139..1]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIMGLDVGS KTVGVAISDP LGFTAQGLEI IKIDEEKAEF GFTRLEELVK QYQVEQFVIG  60
   61 LPKNMNNTNG PRVDASITYG NHIEHLFGLP VHYQDERLTT VEAERMLIEQ ADISRGKRKK 120
  121 VIDKLAAQLI LQNYLNRNF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.045757
Match: 1vhxA
Description: Crystal structure of Putative Holliday junction resolvase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nuclease activity 1.80465910244067 bayes_pls_golite062009
catalytic activity 1.25233849524628 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.67622280196747 bayes_pls_golite062009
ribonuclease activity 0.567315548679559 bayes_pls_golite062009
exonuclease activity 0.550209133970558 bayes_pls_golite062009
hydrolase activity 0.482149639923564 bayes_pls_golite062009
endonuclease activity 0.164428265680495 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle