YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|151942550
Organism:	Saccharomyces cerevisiae YJM789
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|151942550.

Description	E-value	Query Range	Subject Range
ADRX_YEAST - Adrenodoxin homolog, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAH1 ... gi\|151942550 - gi\|151942550\|gb\|EDN60896.1\| adrenodoxin-like protein [Saccharomyces cerevisiae YJM789] YAH1 - Ferredoxin of the mitochondrial matrix required for formation of cellular iron-sulfur proteins; invo...	2.0E-42	[1..172]	[1..172]
MFDX2_ARATH - Adrenodoxin-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=MFDX2 PE=2 SV=1	1.0E-37	[1..171]	[13..192]
etp1 - mitochondrial type I [2Fe-2S] ferredoxin Etp1 / cytochrome oxidase cofactor Cox15, fusion gi\|19115748 - gi\|19115748\|ref\|NP_594836.1\| mitochondrial type I [2Fe-2S] ferredoxin Etp1/ cytochrome oxidase cofac...	7.0E-36	[9..169]	[467..627]
gi\|218198975 - gi\|218198975\|gb\|EEC81402.1\| hypothetical protein OsI_24632 [Oryza sativa Indica Group] gi\|222636316, gi... - gi\|50933753\|ref\|XP_476404.1\| putative ferredoxin [Oryza sativa (japonica cultivar-group)], gi\|331464...	2.0E-33	[5..171]	[12..176]
gi\|32416044, gi\|... - gi\|32416044\|ref\|XP_328500.1\| hypothetical protein [Neurospora crassa], gi\|28919405\|gb\|EAA28849.1\| hy... gi\|85089735 - gi\|85089735\|ref\|XP_958085.1\| hypothetical protein NCU07794 [Neurospora crassa OR74A]	9.0E-32	[3..171]	[9..189]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-31	[27..171]	[1..149]
gi\|30313424 - gi\|30313424\|gb\|AAM50091.1\| ferredoxin-like protein Fd1 [Cryptosporidium parvum]	1.0E-30	[12..171]	[7..162]

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Predicted Domain #1

Region A:
Residues: [1-51]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKIVTRAGH TARISNIAAH LLRTSPSLLT RTTTTTRFLP FSTSSFLNHG H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	2.522879
Match:	1cqxA_
Description:	Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ferrous iron binding	1.85747866468448	bayes_pls_golite062009
binding	1.43854872579441	bayes_pls_golite062009
2 iron, 2 sulfur cluster binding	0.64064605761447	bayes_pls_golite062009
iron ion binding	0.573352512627799	bayes_pls_golite062009
electron carrier activity	0.304665256428442	bayes_pls_golite062009
protein binding	0.299955399062748	bayes_pls_golite062009
iron-sulfur cluster binding	0.19654473978775	bayes_pls_golite062009
metal cluster binding	0.19654473978775	bayes_pls_golite062009
catalytic activity	0.105119876745552	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [52-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKKPKPGEEL KITFILKDGS QKTYEVCEGE TILDIAQGHN LDMEGACGGS CACSTCHVIV  60
   61 DPDYYDALPE PEDDENDMLD LAYGLTETSR LGCQIKMSKD IDGIRVALPQ MTRNVNNNDF 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	216.315398
Match:	1l6uA_
Description:	Adrenodoxin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: