YRC Public Data Repository - Protein Structure Prediction

Protein:	GON1_VERMO
Organism:	Verasper moseri
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GON1_VERMO.

Description	E-value	Query Range	Subject Range
GON1_HAPBU - Progonadoliberin-1 OS=Haplochromis burtoni GN=gnrh1 PE=1 SV=2	143.0	[0..5]	[94..1]
gi\|28849243, gi\|... - gi\|28849243\|dbj\|BAC65154.1\| seabream-type gonadotropin-releasing hormone precursor [Oreochromis nilo...	142.0	[0..5]	[94..1]
gi\|50659042 - gi\|50659042\|gb\|AAT80334.1\| seabream-type gonadotropin-releasing hormone precursor [Rachycentron cana...	140.0	[0..5]	[94..1]
gi\|67937409 - gi\|67937409\|gb\|AAY83273.1\| seabream-type gonadotropin-releasing hormone [Paralichthys olivaceus]	139.0	[0..1]	[94..1]
gi\|63391988 - gi\|63391988\|gb\|AAU94309.2\| prepro pejerrey-type gonadotropin-releasing hormone [Odontesthes bonarien...	138.0	[0..5]	[94..1]
gi\|57471989 - gi\|57471989\|gb\|AAW51121.1\| pejerrey-type gonadotropin-releasing hormone precursor [Monopterus albus]	137.0	[0..1]	[94..1]
GON1_PAGMA - Progonadoliberin-1 OS=Pagrus major GN=gnrh1 PE=3 SV=1	131.0	[0..5]	[94..1]
gi\|34872165 - gi\|34872165\|gb\|AAQ83269.1\| seabream-type gonadotropin-releasing hormone preproprotein [Mugil cephalu...	123.0	[0..5]	[94..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRKMAVKTL SVWLLLVGTL VPQHCCQHWS YGLSPGGKRQ LDSLSQTLGN VVEEFPRVDS  60
   61 PCSVLGGAEE SPFAGIYRMK GFLGSITDRG NRTQNI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.849	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits