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View Structure Prediction Details

Protein: GON1_VERMO
Organism: Verasper moseri
Length: 96 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GON1_VERMO.

Description E-value Query
Range
Subject
Range
GON1_HAPBU - Progonadoliberin-1 OS=Haplochromis burtoni GN=gnrh1 PE=1 SV=2
143.0 [0..5] [94..1]
gi|28849243, gi|... - gi|28849243|dbj|BAC65154.1| seabream-type gonadotropin-releasing hormone precursor [Oreochromis nilo...
142.0 [0..5] [94..1]
gi|50659042 - gi|50659042|gb|AAT80334.1| seabream-type gonadotropin-releasing hormone precursor [Rachycentron cana...
140.0 [0..5] [94..1]
gi|67937409 - gi|67937409|gb|AAY83273.1| seabream-type gonadotropin-releasing hormone [Paralichthys olivaceus]
139.0 [0..1] [94..1]
gi|63391988 - gi|63391988|gb|AAU94309.2| prepro pejerrey-type gonadotropin-releasing hormone [Odontesthes bonarien...
138.0 [0..5] [94..1]
gi|57471989 - gi|57471989|gb|AAW51121.1| pejerrey-type gonadotropin-releasing hormone precursor [Monopterus albus]
137.0 [0..1] [94..1]
GON1_PAGMA - Progonadoliberin-1 OS=Pagrus major GN=gnrh1 PE=3 SV=1
131.0 [0..5] [94..1]
gi|34872165 - gi|34872165|gb|AAQ83269.1| seabream-type gonadotropin-releasing hormone preproprotein [Mugil cephalu...
123.0 [0..5] [94..1]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRKMAVKTL SVWLLLVGTL VPQHCCQHWS YGLSPGGKRQ LDSLSQTLGN VVEEFPRVDS  60
   61 PCSVLGGAEE SPFAGIYRMK GFLGSITDRG NRTQNI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.849 a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.849 a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.810 a.24.17 Group V grass pollen allergen
View Download 0.810 a.24.17 Group V grass pollen allergen
View Download 0.724 a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.694 a.24.18 Description not found.
View Download 0.600 a.19.1 Fertilization protein
View Download 0.600 a.19.1 Fertilization protein
View Download 0.483 a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle