YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149698161
Organism:	Equus caballus
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149698161.

Description	E-value	Query Range	Subject Range
RS3A_MOUSE - 40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3 gi\|51980539 - gb\|AAH82142.1\| Unknown (protein for MGC:98352) [Xenopus laevis]	433.0	[0..1]	[264..1]
RS3A_MACFA - 40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3	433.0	[0..1]	[264..1]
gi\|76703555, gi\|... - gi\|76703557\|ref\|XP_876951.1\| PREDICTED: similar to ribosomal protein S3a isoform 4 [Bos taurus], gi\|...	432.0	[0..1]	[264..1]
RS3A_RAT - 40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2 tr\|G3HKG8\|G3HKG8... - 40S ribosomal protein S3a OS=Cricetulus griseus GN=Rps3a PE=3 SV=1	431.0	[0..1]	[264..1]
gi\|306553 - gi\|306553\|gb\|AAA35682.1\| ribosmal protein small subunit	431.0	[0..1]	[264..1]
gi\|57106406 - gi\|57106406\|ref\|XP_534831.1\| PREDICTED: similar to ribosomal protein S3a isoform 1 [Canis familiaris...	430.0	[0..1]	[264..1]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGKNKRLT KGGKKGAKKK VVDPFSKKDW YDVKAPAMFN IRNIGKTLVT RTQGTKIASD  60
   61 GLKGRVFEVS LADLQND

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVAFRKFKLI TEDVQGKNCL TNFHGMDLTR DKMCSMVKKW QTMIEAHVDV KTTDGYLLRL  60
   61 FCVGFTKKRN NQIRKTSYAQ HQQVRQIRKK MMEIMTREVQ TNDLKEVVNK LIPDSIGKDI 120
  121 EKA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [201-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CQSIYPLHDV FVRKVKMLKK PKFELGKLME LHGEGSSSGK ATGDETGAKV ERADGYEPPV  60
   61 QESV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits