YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|149698161
Organism: Equus caballus
Length: 264 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149698161.

Description E-value Query
Range
Subject
Range
RS3A_MOUSE - 40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3
gi|51980539 - gb|AAH82142.1| Unknown (protein for MGC:98352) [Xenopus laevis]
433.0 [0..1] [264..1]
RS3A_MACFA - 40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3
433.0 [0..1] [264..1]
gi|76703555, gi|... - gi|76703557|ref|XP_876951.1| PREDICTED: similar to ribosomal protein S3a isoform 4 [Bos taurus], gi|...
432.0 [0..1] [264..1]
RS3A_RAT - 40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2
tr|G3HKG8|G3HKG8... - 40S ribosomal protein S3a OS=Cricetulus griseus GN=Rps3a PE=3 SV=1
431.0 [0..1] [264..1]
gi|306553 - gi|306553|gb|AAA35682.1| ribosmal protein small subunit
431.0 [0..1] [264..1]
gi|57106406 - gi|57106406|ref|XP_534831.1| PREDICTED: similar to ribosomal protein S3a isoform 1 [Canis familiaris...
430.0 [0..1] [264..1]

Back

Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGKNKRLT KGGKKGAKKK VVDPFSKKDW YDVKAPAMFN IRNIGKTLVT RTQGTKIASD  60
   61 GLKGRVFEVS LADLQND

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVAFRKFKLI TEDVQGKNCL TNFHGMDLTR DKMCSMVKKW QTMIEAHVDV KTTDGYLLRL  60
   61 FCVGFTKKRN NQIRKTSYAQ HQQVRQIRKK MMEIMTREVQ TNDLKEVVNK LIPDSIGKDI 120
  121 EKA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [201-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CQSIYPLHDV FVRKVKMLKK PKFELGKLME LHGEGSSSGK ATGDETGAKV ERADGYEPPV  60
   61 QESV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle