YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|151942135
Organism:	Saccharomyces cerevisiae YJM789
Length:	325 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|151942135.

Description	E-value	Query Range	Subject Range
CTH1 - Member of the CCCH zinc finger family; has similarity to mammalian Tis11 protein, which activates tr... CTH1_YEAST - mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTH1 PE=1 SV=2 gi\|151942135 - gi\|151942135\|gb\|EDN60491.1\| CCCH zinc finger protein [Saccharomyces cerevisiae YJM789] gi\|190404893 - gi\|190404893\|gb\|EDV08160.1\| zinc finger protein CTH1 [Saccharomyces cerevisiae RM11-1a]	4.0E-80	[1..325]	[1..325]
C3H14_ARATH - Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis thaliana GN=At1g66810 PE=2 SV=1	5.0E-36	[5..276]	[58..304]
CE23329 - status:Partially_confirmed UniProt:Q9U2V1 protein_id:CAB55126.1	2.0E-30	[112..302]	[1..189]
gi\|2353340 - gi\|2353340\|gb\|AAB69448.1\| Tis11 family protein [Crassostrea virginica]	2.0E-29	[149..316]	[53..224]

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Predicted Domain #1

Region A:
Residues: [1-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPNVAPNSY YLNIPNANST STTTSSIFSD LNKEYESKIK EIEEYYIKTL LNENTDNDDS  60
   61 SSSEGHNINE TDILSEYSPR PSPWLPSKPN CYHPLGDFKD LIISDSRPTN TLPINNPFAG 120
  121 NNNISTLATT EKKRKKRSLE VEINPTYTTS AFSLPLTAEN LQKLSQVDSQ STGLPYTLPI 180
  181 QKTTKLEPCR RAPLQLPQLV NKTLYKTELC ESFTIKGYCK YGNKCQFAHG LNELKFKKKS 240
  241 NNYRTKPCIN WSKLGYCPYG KRCCFKHGDD KDVEIYQNAN DGRSKDTALT PLPTSLAPSN 300
  301 NDNITNLSKP RNLHTSVKAL QRMTW

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	9.3
Match:	1k83A
Description:	RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [198-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLVNKTLYKT ELCESFTIKG YCKYGNKCQF AHGLNELKFK KKSNNYRTKP CINWSKLGYC  60
   61 PYGKRCCFKH GDDKDVEIYQ NANDGRSKDT ALTPLPTSLA PSNNDNITNL SKPRNLHTSV 120
  121 KALQRMTW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	1rgoA
Description:	Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits