YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149365380, gi...
Organism:	Yersinia pestis CA88-4125
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149365380, gi....

Description	E-value	Query Range	Subject Range
MURQ_THEPX - N-acetylmuramic acid 6-phosphate etherase OS=Thermoanaerobacter sp. (strain X514) GN=murQ PE=3 SV=1 gi\|242231194, gi... - gi\|242257306\|ref\|ZP_04802176.1\| glucokinase regulatory-like protein [Thermoanaerobacter sp. X513], g...	2.0E-63	[1..295]	[1..295]
gi\|77978401, gi\|... - gi\|77978401\|ref\|ZP_00833830.1\| COG2103: Predicted sugar phosphate isomerase [Yersinia intermedia ATC...	1.0E-62	[1..295]	[1..295]
gi\|49612710, gi\|... - gi\|50122184\|ref\|YP_051351.1\| N-acetylmuramic acid-6-phosphate etherase [Pectobacterium atrosepticum ...	4.0E-61	[1..295]	[11..305]
gi\|77963382, gi\|... - gi\|77963382\|ref\|ZP_00827192.1\| COG2103: Predicted sugar phosphate isomerase [Yersinia mollaretii ATC...	5.0E-61	[1..295]	[1..295]
MURQ_ERWCT - N-acetylmuramic acid 6-phosphate etherase OS=Erwinia carotovora subsp. atroseptica GN=murQ PE=2 SV=2 MURQ_PECAS - N-acetylmuramic acid 6-phosphate etherase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BA...	6.0E-61	[1..295]	[6..300]
gi\|77958582, gi\|... - gi\|77958582\|ref\|ZP_00822613.1\| COG2103: Predicted sugar phosphate isomerase [Yersinia bercovieri ATC...	5.0E-60	[1..295]	[1..295]
MURQ_PHOLL - N-acetylmuramic acid 6-phosphate etherase OS=Photorhabdus luminescens subsp. laumondii GN=murQ PE=2 ... MURQ_PHOLL - N-acetylmuramic acid 6-phosphate etherase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 1...	6.0E-60	[1..295]	[3..297]
gi\|214035925, gi... - gi\|254478063\|ref\|ZP_05091446.1\| N-acetylmuramic acid 6-phosphate etherase [Carboxydibrachium pacific... Y212_THETN, MURQ... - (Q8RD35) Protein TTE0212, N-acetylmuramic acid 6-phosphate etherase OS=Thermoanaerobacter tengcongen... MURQ_CALS4 - N-acetylmuramic acid 6-phosphate etherase OS=Caldanaerobacter subterraneus subsp. tengcongensis (str...	6.0E-59	[1..295]	[1..295]
MURQ_ACTP2 - N-acetylmuramic acid 6-phosphate etherase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20... gi\|32034939 - gi\|32034939\|ref\|ZP_00135030.1\| COG2103: Predicted sugar phosphate isomerase [Actinobacillus pleuropn...	8.0E-59	[2..295]	[9..302]
gi\|116184416, gi... - gi\|75854865\|ref\|ZP_00762535.1\| COG2103: Predicted sugar phosphate isomerase [Vibrio sp. Ex25], gi\|25...	1.0E-58	[2..295]	[9..302]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLGALISES RNPATMELDK LSTLAMLTCI NDEDRKVPDA IRLVLPAVAQ AVDLAADALK  60
   61 QGGRLIYLGA GTSGRLGVLD ASECPPTFGV PHGMVIGLIA GGPGALLKAV EGAEDDIALG 120
  121 MRDLQDLQLT ATDMVVGLAA SGRTPYVIGA LRYARELGCP TAAISCNPDS PIAQEAQVAI 180
  181 SPVVGPEALT GSTRMKSGTA QKLVLNMLST GAMVKLGKVY QNLMVDVKAT NVKLVDRACR 240
  241 IVVEATGVSR AEAEHALRQT DFEVKPAILM LLKGVSAEQA RQDLRQHHGY LRAAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.221849
Match:	1nriA
Description:	Hypothetical protein HI0754
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutamine-fructose-6-phosphate transaminase (isomerizing) activity	4.33396915400498	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	2.20957751268338	bayes_pls_golite062009
glucose-6-phosphate isomerase activity	2.18594864654196	bayes_pls_golite062009
catalytic activity	1.89824366260041	bayes_pls_golite062009
intramolecular oxidoreductase activity	1.73798902031905	bayes_pls_golite062009
isomerase activity	1.38908530446706	bayes_pls_golite062009
intramolecular transferase activity, phosphotransferases	0.15645319812963	bayes_pls_golite062009
D-sedoheptulose 7-phosphate isomerase activity	0.0685465507529992	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: