YRC Public Data Repository - Protein Structure Prediction

Protein:	GMHA1_CAMJE, GHA...
Organism:	Campylobacter jejuni
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GMHA1_CAMJE, GHA....

Description	E-value	Query Range	Subject Range
gi\|112805305, gi... - gi\|153951000\|ref\|YP_001397748.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. doylei 269.97...	181.0	[0..1]	[184..1]
gi\|86150345, gi\|... - gi\|86150345\|ref\|ZP_01068571.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. jejuni CF93-6],...	180.0	[0..1]	[184..1]
gi\|40217913 - gi\|40217913\|gb\|AAR82882.1\| putative phosphoheptose isomerase 1 [Campylobacter jejuni]	180.0	[0..1]	[184..1]
gi\|86152528, gi\|... - gi\|86152528\|ref\|ZP_01070733.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. jejuni HB93-13]... gi\|41058387 - gi\|41058387\|gb\|AAR99164.1\| putative phosphoheptose isomerase1 [Campylobacter jejuni]	180.0	[0..1]	[184..1]
GMHA_HELPJ - Phosphoheptose isomerase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=gmhA PE=3 SV=1 gi\|7437308 - pir\|\|B71887 phosphoheptose isomerase - Helicobacter pylori (strain J99)	179.0	[0..1]	[186..1]
gi\|40218031 - gi\|40218031\|gb\|AAR82940.1\| Gmh [Campylobacter jejuni] gi\|167005738, gi... - gi\|87305877\|ref\|ZP_01088030.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. jejuni 81-176],...	179.0	[0..1]	[184..1]
gi\|85842071, gi\|... - gi\|86150901\|ref\|ZP_01069117.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. jejuni 260.94],...	179.0	[0..1]	[184..1]
gi\|57166828, gi\|... - gi\|57238024\|ref\|YP_179273.1\| phosphoheptose isomerase [Campylobacter jejuni RM1221], gi\|57166828\|gb\|...	175.0	[0..1]	[184..1]
GMHA_HELPH - Phosphoheptose isomerase OS=Helicobacter pylori (strain HPAG1) GN=gmhA PE=3 SV=1	175.0	[0..1]	[186..1]
GMHA_CAMLR - Phosphoheptose isomerase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=gmhA PE=3 SV...	172.0	[0..1]	[185..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINLVEKEWQ EHQKIVQASE ILKGQIAKVG ELLCECLKKG GKILICGNGG SAADAQHFAA  60
   61 ELSGRYKKER KALAGIALTT DTSALSAIGN DYGFEFVFSR QVEALGNEKD VLIGISTSGK 120
  121 SPNVLEALKK AKELNMLCLG LSGKGGGMMN KLCDHNLVVP SDDTARIQEM HILIIHTLCQ 180
  181 IIDESF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.09691
Match:	1tk9A
Description:	Crystal Structure of Phosphoheptose isomerase 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-sedoheptulose 7-phosphate isomerase activity	4.22038446205301	bayes_pls_golite062009
catalytic activity	1.89824366260041	bayes_pls_golite062009
glucose-6-phosphate isomerase activity	1.44949513607659	bayes_pls_golite062009
isomerase activity	1.38908530446706	bayes_pls_golite062009
glutamine-fructose-6-phosphate transaminase (isomerizing) activity	1.324808220726	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	1.29799137917321	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.82349592171096	bayes_pls_golite062009
intramolecular transferase activity, phosphotransferases	0.15645319812963	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: