YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GDIA_PANTR
Organism: Pan troglodytes
Length: 447 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GDIA_PANTR.

Description E-value Query
Range		 Subject
Range
gi|34810749 - gi|34810749|pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociatio...
 0.0 [1..447] [3..449]
gi|114629263 - gi|114629263|ref|XP_507638.2| PREDICTED: GDP dissociation inhibitor 2 [Pan troglodytes]
 0.0 [1..445] [307..754]
GDIA_PONPY - Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1
 0.0 [1..447] [1..447]
gi|217418277 - gi|217418277|gb|ACK44281.1| GDP dissociation inhibitor 1 (predicted) [Oryctolagus cuniculus]
GDIA_RAT - Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1
 0.0 [1..447] [1..447]
GDIA_MOUSE - Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3
 0.0 [1..447] [1..447]
GDIA_CANLF - Rab GDP dissociation inhibitor alpha OS=Canis lupus familiaris GN=GDI1 PE=2 SV=1
 0.0 [1..447] [1..447]

Back

Predicted Domain #1
Region A:
Residues: [1-447] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEYDVIVL GTGLTECILS GIMSVNGKKV LHMDRNPYYG GESSSITPLE ELYKRFQLLE  60
   61 GPPESMGRGR DWNVDLIPKF LMANGQLVKM LLYTEVTRYL DFKVVEGSFV YKGGKIYKVP 120
  121 STETEALASN LMGMFEKRRF RKFLVFVANF DENDPKTFEG VDPQTTSMRD VYRKFDLGQD 180
  181 VIDFTGHALA LYRTDDYLDQ PCLETVNRIK LYSESLARYG KSPYLYPLYG LGELPQGFAR 240
  241 LSAIYGGTYM LNKPVDDIIM ENGKVVGVKS EGEVARCKQL ICDPSYIPDR VRKAGQVIRI 300
  301 ICILSHPIKN TNDANSCQII IPQNQVNRKS DIYVCMISYA HNVAAQGKYI AIASTTVETT 360
  361 DPEKEVEPAL ELLEPIDQKF VAISDLYEPI DDGCESQVFC SCSYDATTHF ETTCNDIKDI 420
  421 YKRMAGTAFD FENMKRKQND VFGEAEQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1lv0A
Description: Crystal structure of the Rab effector guanine nucleotide dissociation inhibitor (GDI) in complex with a geranylgeranyl (GG) peptide
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
small GTPase regulator activity 1.82777033221452 bayes_pls_golite062009
GTPase regulator activity 1.69589677829425 bayes_pls_golite062009
nucleoside-triphosphatase regulator activity 1.67690582043816 bayes_pls_golite062009
binding 1.28745887296004 bayes_pls_golite062009
enzyme regulator activity 1.00883251592654 bayes_pls_golite062009
amine oxidase activity 0.93095855430028 bayes_pls_golite062009
GDP-dissociation inhibitor activity 0.387378304822822 bayes_pls_golite062009
protein binding 0.347133050347128 bayes_pls_golite062009
transporter activity 0.0442116448779152 bayes_pls_golite062009
antioxidant activity 0.0209903577090486 bayes_pls_golite062009
transcription regulator activity 0.00424758775661527 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle