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View Structure Prediction Details

Protein: gcy-37
Organism: Caenorhabditis elegans
Length: 708 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gcy-37.

Description E-value Query
Range
Subject
Range
gi|39585919, gi|... - gi|39585919|emb|CAE68208.1| Hypothetical protein CBG13876 [Caenorhabditis briggsae], gi|187028298|em...
gi|157759205 - gi|157759205|ref|XP_001671946.1| Hypothetical protein CBG13876 [Caenorhabditis briggsae AF16]
525.0 [0..8] [708..2]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGWTHVCVS ALILRKYGPE VLEEILRKAG YQEDIKFDIQ CYYDDTETMR IFRVAATVLG  60
   61 LSVDDMWEMY GEFLITHACE TGWQKMLFCM ANNLQEFLDN LNSMHYFIDQ IAFKSEMKGP 120
  121 TFQCEPFGES GLKLHYFSFR QGLFPIVKGL VRKTARTLFE MDVKVCMLER NQERRKSGMV 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.522879
Match: 2o09A
Description: No description for 2o09A was found.

Predicted Domain #2
Region A:
Residues: [181-422]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHVIFSVEPD DNHRKGKRLF HKFRNTKTTE NAPSFTLSST ILVGLRDFKN IFPYHVCFNK  60
   61 QMIIEHIGIY LLREYGLENK KTLKVSDLMQ LVQPSDIQLT YKNVLSYLNT LFIFQLKHHS 120
  121 KRNEVQEGSS EAFQQPLVLK GEMMPINDGN SIIFICSPHV TTVRDILNLK LYISDMPMHD 180
  181 ATRDLVMLNQ SRICQMELNK KLEETMKKMK KMTEELEVKK SQTDRLLFEF VPPVIAEALR 240
  241 AA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.30103
Match: 2evaA
Description: No description for 2evaA was found.

Predicted Domain #3
Region A:
Residues: [423-619]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTVPAQEFSD CSVIFTDIPD FFTISVNCSP TEIITVVTDL FHRFDRIIEK HKGYKVLSLM  60
   61 DSYLIVGGVP NANQYHCEDS LNLALGLLFE AKQVVVPKLE RSVRLRIGVH CGPVVAGIVS 120
  121 QQKPRFCVLG NTVNVTKSIC SHSSPGKVLV SNAVRTMVTK HLKSIFVFNA NGYLELQSGK 180
  181 VLTHFLEKNE KCSVWDI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.69897
Match: 1yk9A
Description: Crystal structure of a mutant form of the mycobacterial adenylyl cyclase Rv1625c
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [620-708]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDRDKATNDS IDGYRELHSD NGTEEWQEAT VAAYRVISVV DALENKQSRT RKALTRLRSV  60
   61 KRKFRTIQSN DSGVSVSEPN VESAVCSIM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle