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View Structure Prediction Details

Protein: pde-5
Organism: Caenorhabditis elegans
Length: 710 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for pde-5.

Predicted Domain #1
Region A:
Residues: [1-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDASVLKYL QENPKLVEDF VVSNEISPET FKRWAVRRTM KYKNVKNGTS GGTGAWTEPD  60
   61 LSMKRRVILE TSDNRTRILY EITQCCGQLI GTNSIELIVQ NDEGAFSCRK TENGELKLKK 120
  121 VKTSKSADYI QTIVNAGNQT IAEIHFYTQL DSTEKSIVNA VCTWAAATNY YSEVRKLQKH 180
  181 ITCSFLKPKQ SFQLYTHKQE GSDGQDIHEN IAKQRKLSNF LLDVARSIFH DIVSMDAVII 240
  241 KVMNFAQKLV DADRASLFLV DSKNAQIYAR IFDVGTGDEE HVRVNSEGQK EIRFDMSKGI 300
  301 AGYVASTGEG LNIENAYEDE RFNADVDSKT GYTTKTILCM PILIRGIVIG VVQMVNKHDG 360
  361 VFTRQDEDAF EIFAVYCGLA LHHAKLYDKI RRSEQKYRV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 1mc0A
Description: 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [400-710]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALEVLAYHSV CNADEVNKLK KIEINNRIVE LETIDFNGMR LSELEKPLYA VYMFKTLFAD  60
   61 TLRFDTEDLI RFVLTVRKNY RRVAYHNWAH GWSVAHAMFA TLMNSPDAFT KLEALALYVS 120
  121 CLCHDLDHRG KNNAYMKTMS TPLASIYSTS VMERHHFNQT VTILQQDGHN ILKSLSSEDY 180
  181 KKTLSLIKHC ILATDLALFF SNKAKLNVIL DNNTFDINRQ EHRLLTQAVM MTGCDLVASA 240
  241 KPWNIQTETV KVIFEEFYDQ GDAERLSGKE PIPMMDRQQA HMLPQMQASR LHAWDLYALL 300
  301 RLNRANIPEK R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.522879
Match: 2o8hA
Description: No description for 2o8hA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle