YRC Public Data Repository - Protein Structure Prediction

Protein:	FUCR_ECOLI
Organism:	Escherichia coli
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUCR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|37199558, gi\|... - gi\|37680809\|ref\|NP_935418.1\| transcriptional regulator of sugar metabolism [Vibrio vulnificus YJ016]...	214.0	[0..5]	[241..15]
gi\|83571653 - gi\|83571653\|ref\|ZP_00923093.1\| COG1349: Transcriptional regulators of sugar metabolism [Shigella dys...	213.0	[0..2]	[241..15]
gi\|91191480, gi\|... - gi\|91223394\|ref\|ZP_01258659.1\| transcriptional regulator, DeoR family protein [Vibrio alginolyticus ...	213.0	[0..5]	[240..6]
gi\|110616805, gi... - gi\|110807257\|ref\|YP_690777.1\| DNA-binding transcriptional repressor GlpR [Shigella flexneri 5 str. 8... gi\|238860967, gi... - gi\|238902516\|ref\|YP_002928312.1\| DNA-binding transcriptional repressor [Escherichia coli BW2952], gi... gi\|253322792, gi... - gi\|253771748\|ref\|YP_003034579.1\| transcriptional regulator, DeoR family [Escherichia coli BL21(DE3)]... gi\|226839096, gi... - gi\|254038590\|ref\|ZP_04872646.1\| glycerol-3-phosphate regulon repressor [Escherichia sp. 1_1_43], gi\|... gi\|606358\|gb\|AAA... - CG Site No. 688 [Escherichia coli], DNA-binding transcriptional repressor [Escherichia coli K12], DN... gi\|73857500, gi\|... - gi\|74314023\|ref\|YP_312442.1\| DNA-binding transcriptional repressor GlpR [Shigella sonnei Ss046], gi\|... gi\|170683823, gi... - gi\|170683823\|ref\|YP_001745670.1\| glycerol-3-phosphate regulon repressor [Escherichia coli SMS-3-5], ... gi\|82778762, gi\|... - gi\|82778762\|ref\|YP_405111.1\| DNA-binding transcriptional repressor GlpR [Shigella dysenteriae Sd197]... gi\|169890773, gi... - gi\|170082938\|ref\|YP_001732258.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 s... gi\|192957880, gi... - gi\|75237024\|ref\|ZP_00721080.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ... gi\|209920880, gi... - gi\|209920880\|ref\|YP_002294964.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli SE11],... gi\|193061762, gi... - gi\|75260289\|ref\|ZP_00731557.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ... gi\|194431129, gi... - gi\|194431129\|ref\|ZP_03063422.1\| glycerol-3-phosphate regulon repressor [Shigella dysenteriae 1012], ... gi\|218697105, gi... - gi\|218697105\|ref\|YP_002404772.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli 55989]... gi\|218362739, gi... - gi\|218555971\|ref\|YP_002388884.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli IAI1],... gi\|81247190, gi\|... - gi\|82545779\|ref\|YP_409726.1\| DNA-binding transcriptional repressor GlpR [Shigella boydii Sb227], gi\|... gi\|218707013, gi... - gi\|218707013\|ref\|YP_002414532.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli UMN026... gi\|89110588, gi\|... - gi\|89110588\|ref\|AP_004368.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 subst... gi\|218372153, gi... - gi\|218702167\|ref\|YP_002409796.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli IAI39]... GLPR_ECOLI - Glycerol-3-phosphate regulon repressor - Escherichia coli GLPR_SHIFL - Glycerol-3-phosphate regulon repressor OS=Shigella flexneri GN=glpR PE=3 SV=1 gi\|24053898, gi\|... - gi\|24114688\|ref\|NP_709198.1\| DNA-binding transcriptional repressor GlpR [Shigella flexneri 2a str. 3... gi\|75211789, gi\|... - gi\|75211789\|ref\|ZP_00711853.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ... gi\|75229568, gi\|... - gi\|75229568\|ref\|ZP_00716111.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ... gi\|30043556, gi\|... - gi\|30065294\|ref\|NP_839465.1\| DNA-binding transcriptional repressor GlpR [Shigella flexneri 2a str. 2... gi\|187731240, gi... - gi\|75179956\|ref\|ZP_00699943.1\| COG1349: Transcriptional regulators of sugar metabolism [Shigella boy... gi\|1789829, gi\|1... - gi\|1789829\|gb\|AAC76448.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. ... gi\|157080914, gi... - gi\|75188196\|ref\|ZP_00701463.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ...	213.0	[0..2]	[241..3]
gi\|254229357, gi... - gi\|75855918\|ref\|ZP_00763557.1\| COG1349: Transcriptional regulators of sugar metabolism [Vibrio sp. E...	213.0	[0..5]	[240..6]
gi\|106881745, gi... - gi\|119946783\|ref\|YP_944463.1\| transcriptional regulator of DeoR family protein [Psychromonas ingraha...	213.0	[0..2]	[239..16]
gi\|20808937 - gi\|20808937\|ref\|NP_624108.1\| Transcriptional regulator of sugar metabolism [Thermoanaerobacter tengc... gi\|20808937, gi\|... - gi\|20808937\|ref\|NP_624108.1\| sugar metabolism transcriptional regulator [Thermoanaerobacter tengcong...	212.0	[0..3]	[241..4]
gi\|254795340, gi... - gi\|254795340\|ref\|YP_003080177.1\| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str... gi\|168765774, gi... - gi\|189364645\|gb\|EDU83064.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|168759451, gi... - gi\|189369659\|gb\|EDU88075.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|189359067, gi... - gi\|189359067\|gb\|EDU77486.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|188018387, gi... - gi\|188018387\|gb\|EDU56509.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|209756348, gi... - pir\|\|C86008 glp operon repressor [imported] - Escherichia coli (strain O157:H7, substrain EDL933), ... gi\|15803930, gi\|... - gi\|15803930\|ref\|NP_289966.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli O157:H7 ED... gi\|13363740, gi\|... - gi\|15833520\|ref\|NP_312293.1\| GlpR [Escherichia coli O157:H7], gi\|13363740\|dbj\|BAB37689.1\| repressor ... gi\|217321601, gi... - gi\|217325380\|ref\|ZP_03441464.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str... gi\|209398865, gi... - gi\|209398865\|ref\|YP_002272860.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 st... gi\|189379928, gi... - gi\|189379928\|gb\|EDU98344.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|168785231, gi... - gi\|189374493\|gb\|EDU92909.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|189002352, gi... - gi\|189002352\|gb\|EDU71338.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|187771671, gi... - gi\|187771671\|gb\|EDU35515.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|208820819, gi... - gi\|208820819\|ref\|ZP_03261139.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str... gi\|13363740, gi\|... - gi\|15833520\|ref\|NP_312293.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli O157:H7 st... gi\|208811951, gi... - gi\|208811951\|ref\|ZP_03253280.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str... gi\|208809607, gi... - gi\|208809607\|ref\|ZP_03251944.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str... gi\|195934913 - gi\|195934913\|ref\|ZP_03080295.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli O157:H7...	212.0	[0..2]	[241..3]
tr\|A0A085Q0T6\|A0... - Glycerol-3-phosphate regulon repressor OS=Vibrio cholerae GN=glpR PE=4 SV=1, Transcriptional regulat... gi\|227015587, gi... - gi\|75825205\|ref\|ZP_00754641.1\| COG1349: Transcriptional regulators of sugar metabolism [Vibrio chole... gi\|75823823, gi\|... - gi\|75823823\|ref\|ZP_00753302.1\| COG1349: Transcriptional regulators of sugar metabolism [Vibrio chole... gi\|75817054, gi\|... - gi\|75817054\|ref\|ZP_00747509.1\| COG1349: Transcriptional regulators of sugar metabolism [Vibrio chole... gi\|125622817, gi... - gi\|75821039\|ref\|ZP_00751075.1\| COG1349: Transcriptional regulators of sugar metabolism [Vibrio chole... gi\|197753768, gi... - gi\|254284566\|ref\|ZP_04959533.1\| transcriptional regulator, DeoR family [Vibrio cholerae AM-19226], g... gi\|153824784, gi... - gi\|153824784\|ref\|ZP_01977451.1\| transcriptional regulator, DeoR family [Vibrio cholerae MZO-2], gi\|1... gi\|229356271, gi... - gi\|229505920\|ref\|ZP_04395429.1\| glycerol-3-phosphate regulon repressor DeoR family [Vibrio cholerae ... gi\|227011648, gi... - gi\|227812506\|ref\|YP_002812516.1\| transcriptional regulator, DeoR family [Vibrio cholerae M66-2], gi\|... gi\|229526509, gi... - gi\|229526509\|ref\|ZP_04415913.1\| glycerol-3-phosphate regulon repressor DeoR family [Vibrio cholerae ... gi\|229340450, gi... - gi\|229522465\|ref\|ZP_04411881.1\| glycerol-3-phosphate regulon repressor DeoR family [Vibrio cholerae ... gi\|121549083, gi... - gi\|121586655\|ref\|ZP_01676439.1\| transcriptional regulator, DeoR family [Vibrio cholerae 2740-80], gi... gi\|229334522, gi... - gi\|229528160\|ref\|ZP_04417551.1\| glycerol-3-phosphate regulon repressor DeoR family [Vibrio cholerae ... gi\|153801403, gi... - gi\|153801403\|ref\|ZP_01955989.1\| transcriptional regulator, DeoR family [Vibrio cholerae MZO-3], gi\|1... gi\|153217123, gi... - gi\|153217123\|ref\|ZP_01950887.1\| transcriptional regulator, DeoR family [Vibrio cholerae 1587], gi\|12... gi\|153818309, gi... - gi\|153818309\|ref\|ZP_01970976.1\| transcriptional regulator, DeoR family [Vibrio cholerae NCTC 8457], ...	212.0	[0..1]	[243..1]
gi\|254845809, gi... - gi\|75831372\|ref\|ZP_00760636.1\| COG1349: Transcriptional regulators of sugar metabolism [Vibrio chole... gi\|229352671, gi... - gi\|229510226\|ref\|ZP_04399706.1\| glycerol-3-phosphate regulon repressor DeoR family [Vibrio cholerae ... gi\|229371938, gi... - gi\|229605452\|ref\|YP_002876156.1\| glycerol-3-phosphate regulon repressor DeoR family [Vibrio cholerae... gi\|9658377, gi\|1... - gi\|9658377\|gb\|AAF96836.1\| transcriptional regulator, DeoR family [Vibrio cholerae O1 biovar eltor st... gi\|229517644, gi... - gi\|229517644\|ref\|ZP_04407089.1\| glycerol-3-phosphate regulon repressor DeoR family [Vibrio cholerae ... gi\|11356241 - pir\|\|C82397 transcription regulator DeoR family VCA0940 [imported] - Vibrio cholerae (strain N16961 ...	212.0	[0..1]	[243..1]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAARQQAIV DLLLNHTSLT TEALSEQLKV SKETIRRDLN ELQTQGKILR NHGRAKYIHR  60
   61 QNQDSGDPFH IRLKSHYAHK ADIAREALAW IEEGMVIALD ASSTCWYLAR QLPDINIQVF 120
  121 TNSHPICHEL GKRERIQLIS SGGTLERKYG CYVNPSLISQ LKSLEIDLFI FSCEGIDSSG 180
  181 ALWDSNAINA DYKSMLLKRA AQSLLLIDKS KFNRSGEARI GHLDEVTHII SDERQVATSL 240
  241 VTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1oozA
Description:	Deletion mutant of SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.68776709414398	bayes_pls_golite062009
nucleic acid binding	0.965520574888216	bayes_pls_golite062009
transcription regulator activity	0.769423781192988	bayes_pls_golite062009
DNA binding	0.223734115868557	bayes_pls_golite062009
binding	0.199466104892993	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: