YRC Public Data Repository - Protein Structure Prediction

Protein:	SO9018
Organism:	Shewanella oneidensis
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO9018.

Description	E-value	Query Range	Subject Range
gi\|24376008, gi\|... - gi\|24376008\|ref\|NP_720051.1\| ISSod10, transposase OrfB [Shewanella oneidensis MR-1], gi\|24351011\|gb\|... SO4532 - ISSod10 transposase OrfB	150.0	[0..1]	[185..1]
gi\|37200110, gi\|... - gi\|37681358\|ref\|NP_935967.1\| transposase and inactivated derivative [Vibrio vulnificus YJ016], gi\|37...	148.0	[0..9]	[185..1]
gi\|27364599, gi\|... - gi\|27364599\|ref\|NP_760127.1\| transposase [Vibrio vulnificus CMCP6], gi\|27360718\|gb\|AAO09654.1\|AE0168...	147.0	[0..9]	[185..1]
gi\|46911728, gi\|... - gi\|54310606\|ref\|YP_131626.1\| putative transposase and inactivated derivative [Photobacterium profund...	146.0	[0..2]	[185..4]
gi\|77814490, gi\|... - gi\|77814490\|ref\|ZP_00813749.1\| ISSod10, transposase OrfB [Shewanella putrefaciens CN-32], gi\|7781053...	146.0	[0..2]	[185..4]
gi\|68517791, gi\|... - gi\|68544500\|ref\|ZP_00584142.1\| ISSod10, transposase OrfB [Shewanella baltica OS155], gi\|68517791\|gb\|...	144.0	[0..2]	[185..4]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILNTPGHVA LDRIDVWFQD EARFGQQNTT TRIWAEKGTR PRAVKQQQFE SAYLFGALCP  60
   61 ATGATEAILA PFANSDYMHE HLKLISAATE FGRHALVIMD GAGWHQRDLA DDFDNLSIVK 120
  121 LPPYSPELNP MEQVWQWLRQ HVLANRSFKG YDDIVEQCSI AWNTFIKEPL RVMQLCSRQW 180
  181 AKMNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2f7tA
Description:	No description for 2f7tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits